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Updated: Jul 5, 2026

Vaccinia Virus Infection & Temporal Analysis of Virus Gene Expression: Part 1
Published on: April 8, 2009
Genetic basis for adverse events after smallpox vaccination
David M Reif1, Brett A McKinney, Alison A Motsinger
1Computational Genetics Laboratory, Dartmouth Medical School, Lebanon, New Hampshire, USA.
Genetic factors like MTHFR and IRF1 gene variants are linked to adverse events following smallpox vaccination. This finding could enable pre-vaccination genetic screening to identify individuals at higher risk.
Area of Science:
- Pharmacogenomics
- Immunogenetics
- Vaccine Safety
Background:
- Adverse events (AEs) following vaccinia virus administration can occur.
- Identifying genetic predispositions to AEs may allow for pre-vaccination screening.
Purpose of the Study:
- To identify single nucleotide polymorphisms (SNPs) associated with adverse events (AEs) after smallpox vaccination.
- To validate these genetic associations in independent study cohorts.
Main Methods:
- Two independent clinical trials involving healthy adult volunteers receiving the smallpox vaccine.
- Genotyping of 1,442 SNPs and assessment of local and systemic adverse events.
- Statistical analysis to identify SNPs consistently associated with AEs across both studies.
Main Results:
- Three SNPs in two genes, methylenetetrahydrofolate reductase (MTHFR) and interferon regulatory factor-1 (IRF1), were consistently associated with AEs.
- A nonsynonymous SNP in MTHFR showed increased risk of AEs (ORs 2.3-4.1).
- Two SNPs in IRF1 also demonstrated an association with AEs (ORs 3.0-3.2).
Conclusions:
- Genetic polymorphisms in MTHFR and IRF1 are associated with adverse events after smallpox vaccination.
- These findings suggest potential for genetic screening to predict vaccine-related AEs.
- Further research into these genetic markers could enhance vaccine safety protocols.
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