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Updated: Jul 5, 2026

Production of Haploid Zebrafish Embryos by In Vitro Fertilization
Published on: July 14, 2014
Mismatch repair deficiency does not enhance ENU mutagenesis in the zebrafish germ line
Harma Feitsma1, Ewart de Bruijn, Jose van de Belt
1Hubrecht Institute and Cancer Genomics Center, 3584 CT Utrecht, The Netherlands.
Abstract:
S(N)1-type alkylating agents such as N-ethyl-N-nitrosourea (ENU) are very potent mutagens. They act by transferring their alkyl group to DNA bases, which, upon mispairing during replication, can cause single base pair mutations in the next replication cycle. As DNA mismatch repair (MMR) proteins are involved in the recognition of alkylation damage, we hypothesized that ENU-induced mutation rates could be increased in a MMR-deficient background, which would be beneficial for mutagenesis approaches. We applied a standard ENU mutagenesis protocol to adult zebrafish deficient in the MMR gene msh6 and heterozygous controls to study the effect of MMR on ENU-induced DNA damage. Dose-dependent lethality was found to be similar for homozygous and heterozygous mutants, indicating that there is no difference in ENU resistance. Mutation discovery by high-throughput dideoxy resequencing of genomic targets in outcrossed progeny of the mutagenized fish did also not reveal any differences in germ line mutation frequency. These results may indicate that the maximum mutation load for zebrafish has been reached with the currently used, highly optimized ENU mutagenesis protocol. Alternatively, the MMR system in the zebrafish germ line may be saturated very rapidly, thereby having a limited effect on high-dose ENU mutagenesis.
Insights
Zebrafish deficient in DNA mismatch repair (MMR) did not show increased mutation rates after N-ethyl-N-nitrosourea (ENU) exposure. This suggests current ENU mutagenesis protocols in zebrafish may already be optimized or the MMR system is rapidly saturated.
Area of Science:
- Genetics
- Molecular Biology
- Toxicology
Background:
- N-ethyl-N-nitrosourea (ENU) is a potent mutagen that alkylates DNA bases, leading to mutations.
- DNA mismatch repair (MMR) proteins recognize and repair DNA damage, influencing mutation rates.
- MMR deficiency was hypothesized to enhance ENU-induced mutagenesis for improved genetic screening.
Purpose of the Study:
- To investigate the effect of MMR deficiency on ENU-induced DNA damage and mutation frequency in zebrafish.
- To determine if a MMR-deficient background increases the efficacy of ENU mutagenesis for genetic studies.
Main Methods:
- Adult zebrafish with msh6 deficiency (MMR-deficient) and heterozygous controls were treated with ENU.
- Dose-dependent lethality was assessed to compare ENU resistance between groups.
- High-throughput dideoxy resequencing was used to discover mutations in germline targets of progeny.
Main Results:
- No significant difference in dose-dependent lethality or ENU resistance was observed between MMR-deficient and control zebrafish.
- Germline mutation frequencies did not differ between homozygous msh6 mutants and heterozygous controls.
- The study found no evidence that MMR deficiency enhances ENU-induced mutation rates in zebrafish.
Conclusions:
- The zebrafish MMR system may not significantly modulate ENU-induced germline mutation rates at high doses.
- Current ENU mutagenesis protocols in zebrafish might be operating at near-maximal efficiency.
- Further research could explore MMR saturation dynamics or alternative mutagenesis strategies in zebrafish.
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