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Updated: Jul 5, 2026

Assays for Validating Histone Acetyltransferase Inhibitors
Published on: August 6, 2020
Checkpoints meet the transcription at a novel histone milestone (H3-T11)
Midori Shimada1, Makoto Nakanishi
1Department of Biochemistry and Cell Biology, Medical school, Nagoya City University, Mizuho-ku, Nagoya, Japan.
Abstract:
Eukaryotic cells are equipped with coordinated systems to contend with DNA damage, such as those which are used in cell cycle arrest, DNA repair and apoptosis, to maintain genomic integrity. These systems are regulated at least in part by transcriptional activation or repression. Although processes to activate transcription of specific genes have been characterized in the context of sequence-specific DNA binding factors, mechanisms of transcriptional repression have been largely unexplored. Recently, we identified phosphorylation of histone H3-threonine 11 (H3-T11), a novel chromatin modification for transcriptional activation, that was rapidly reduced after DNA damage. Intriguingly, checkpoint kinase 1 (Chk1) binds to chromatin and phosphorylates H3-T11 under unperturbed conditions. DNA-damage-induced Chk1 dissociation from chromatin closely correlates with decreased phosphorylation of H3-T11. Loss of H3-T11 phosphorylation results in decreased binding of GCN5 with H3, leading to reduced H3-K9 acetylation and transcriptional inhibition. From our results, we have begun to unravel the biological functions of H3-T11 phosphorylation and have uncovered a novel mechanism underlying transcriptional repression in response to DNA damage.
Insights
DNA damage triggers a novel transcriptional repression mechanism. Checkpoint kinase 1 (Chk1) dissociation from chromatin reduces histone H3-threonine 11 (H3-T11) phosphorylation, inhibiting gene expression to maintain genomic integrity.
Area of Science:
- Cellular biology
- Molecular genetics
- Epigenetics
Background:
- Eukaryotic cells possess systems like cell cycle arrest, DNA repair, and apoptosis to maintain genomic integrity following DNA damage.
- Transcriptional regulation, involving activation and repression, plays a crucial role in these cellular responses.
- While transcriptional activation mechanisms are well-studied, the processes underlying transcriptional repression remain largely unexplored.
Purpose of the Study:
- To investigate the role of histone modifications in transcriptional repression after DNA damage.
- To elucidate the mechanism by which DNA damage leads to transcriptional inhibition.
- To identify novel factors and pathways involved in regulating gene expression in response to DNA damage.
Main Methods:
- Chromatin immunoprecipitation (ChIP) to assess protein binding to chromatin.
- Western blotting to detect post-translational modifications like phosphorylation and acetylation.
- Analysis of histone modifications, specifically H3-T11 phosphorylation and H3-K9 acetylation.
- Investigating the interaction between checkpoint kinase 1 (Chk1) and histone H3.
Main Results:
- Phosphorylation of histone H3-threonine 11 (H3-T11), a mark associated with transcriptional activation, is rapidly reduced upon DNA damage.
- Checkpoint kinase 1 (Chk1) phosphorylates H3-T11 under normal conditions and dissociates from chromatin after DNA damage.
- Reduced H3-T11 phosphorylation leads to decreased binding of GCN5 to histone H3, resulting in reduced H3-K9 acetylation and transcriptional repression.
Conclusions:
- H3-T11 phosphorylation is a novel chromatin modification involved in regulating gene expression.
- DNA damage induces transcriptional repression through a mechanism involving Chk1 dissociation, decreased H3-T11 phosphorylation, and subsequent inhibition of H3-K9 acetylation.
- This study uncovers a new pathway for transcriptional repression in response to DNA damage, contributing to the understanding of genomic integrity maintenance.
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