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Updated: Jul 5, 2026

Monitoring Intraspecies Competition in a Bacterial Cell Population by Cocultivation of Fluorescently Labelled Strains
Published on: January 18, 2014
Microbial gut overgrowth guarantees increased spontaneous mutation leading to polyclonality and antibiotic resistance
H K F van Saene1, N Taylor, V Damjanovic
1Department of Medical Microbiology, University of Liverpool, Liverpool L69 3GA, UK. Rick.VanSaene@RLC.NHS.UK
Abstract:
Polyclonality is defined as the occurrence of different genotypes of a bacterial species. We are of the opinion that these different clones originate within the patient. When infections and outbreaks occur, the terms of polyclonal infections and polyclonal outbreaks have been used, respectively. The origin of polyclonality has never been reported, although some authors suggest the acquisition of different clones from different animate and inanimate sources. We think that the gut of the critically ill patient with microbial overgrowth is the ideal site for the de-novo development of new clones, following increased spontaneous mutation.
Insights
Polyclonality, the presence of multiple bacterial genotypes, likely originates within the patient. Critically ill patients with gut microbial overgrowth may foster new clone development through spontaneous mutation.
Area of Science:
- Microbiology
- Infectious Diseases
- Genetics
Background:
- Polyclonality refers to the presence of diverse bacterial genotypes within a species.
- Existing theories suggest external sources for acquiring different bacterial clones.
- The precise origin of bacterial polyclonality remains largely uninvestigated.
Purpose of the Study:
- To propose a novel hypothesis for the de novo origin of bacterial polyclonality.
- To identify the specific conditions and location conducive to the development of new bacterial clones within a host.
Main Methods:
- Review of existing literature on bacterial infections and polyclonality.
- Hypothetical modeling based on clinical observations in critically ill patients.
- Analysis of the role of microbial overgrowth and spontaneous mutation in clonal evolution.
Main Results:
- Polyclonality is hypothesized to originate endogenously within the patient, rather than from external acquisition.
- The gastrointestinal tract of critically ill patients experiencing microbial overgrowth is proposed as a key site for de novo clone development.
- Increased spontaneous mutation rates in this environment are suggested as the mechanism for generating new clones.
Conclusions:
- Bacterial polyclonality in infections and outbreaks may arise from within the patient's gut.
- Critically ill patients with gut dysbiosis represent a unique environment for the spontaneous generation of novel bacterial clones.
- This hypothesis challenges previous notions and offers a new perspective on the epidemiology of polyclonal bacterial infections.
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