Biochemical genetics of nucleotide sugar interconversion reactions
1Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT 06269-3125, USA. wdreiter@uconn.edu
Current Opinion in Plant Biology
|May 20, 2008
Summary
Researchers clarified nucleotide sugar interconversion pathways using metabolic flux analysis and enzyme assays. Plant enzymes expressed in yeast aid in understanding metabolic regulation and producing valuable compounds.
Area of Science:
- Biochemistry
- Metabolic Engineering
- Plant Biology
Background:
- Nucleotide sugar interconversion reactions are crucial but thermodynamically irreversible in vivo.
- Feedback inhibition is a common regulatory theme, yet some recombinant enzyme data remain challenging to interpret.
- Understanding these pathways is key for metabolic engineering and producing valuable compounds.
Purpose of the Study:
- To elucidate the enzymology and regulation of nucleotide sugar interconversion reactions.
- To clarify the significance of proposed alternate metabolic pathways.
- To advance the understanding of arabinosylated cell wall polysaccharide synthesis.
Main Methods:
- Metabolic flux analysis
- Enzyme assays
- Bioinformatics approaches
- Heterologous expression of plant enzymes in yeast
Main Results:
- The significance of several proposed alternate pathways was clarified.
- Expression of plant nucleotide sugar interconversion enzymes in yeast proved effective for studying metabolic regulation.
- Reversibly glycosylated proteins were identified as mutases interconverting UDP-L-arabinose forms.
Conclusions:
- Metabolic flux analysis, enzyme assays, and bioinformatics are powerful tools for studying complex metabolic pathways.
- Heterologous expression systems offer a viable approach for investigating enzyme function and metabolic regulation.
- The discovery of reversibly glycosylated proteins as mutases represents a significant advance in understanding polysaccharide synthesis.
Related Concept Videos
Biosynthesis of Polysaccharides
Polysaccharides such as glycogen and starch are synthesized from nucleoside diphosphate sugars, primarily uridine diphosphate glucose (UDPG) and adenosine diphosphate glucose (ADPG). These activated glucose donors act as key intermediates in carbohydrate metabolism and biosynthesis. UDPG primarily involves glycogen synthesis in animals and many bacteria, while ADPG plays a fundamental role in starch synthesis in plants and certain bacteria.UDPG is formed when glucose-1-phosphate reacts with...
Biosynthesis of Nucleic Acids
Nucleic acid biosynthesis is a fundamental biochemical process that produces the purine and pyrimidine nucleotides essential for DNA and RNA synthesis. This pathway maintains a balanced nucleotide pool, preventing imbalances that could jeopardize genetic integrity and cellular function. Given the crucial role of nucleotides, their synthesis is tightly regulated to ensure proper cellular homeostasis.Purine BiosynthesisThe biosynthesis of purine nucleotides begins with ribose-5-phosphate, a...
Sugars as Energy Storage Molecules
Sugar (a simple carbohydrate) metabolism (chemical reactions) is a classic example of the many cellular processes that use and produce energy. Living things consume sugar as a major energy source because sugar molecules have considerable energy stored within their bonds. Consumed carbohydrates have their origins in photosynthesizing organisms like plants. During photosynthesis, plants use the energy of sunlight to convert carbon dioxide gas into sugar molecules, like glucose. Because this...
Sugars as Energy Storage Molecules
Sugar (a simple carbohydrate) metabolism (chemical reactions) is a classic example of the many cellular processes that use and produce energy. Living things consume sugar as a major energy source because sugar molecules have considerable energy stored within their bonds. Consumed carbohydrates have their origins in photosynthesizing organisms like plants. During photosynthesis, plants use the energy of sunlight to convert carbon dioxide gas into sugar molecules, like glucose. Because this...
Gene Conversion
Other than maintaining genome stability via DNA repair, homologous recombination plays an important role in diversifying the genome. In fact, the recombination of sequences forms the molecular basis of genomic evolution. Random and non-random permutations of genomic sequences create a library of new amalgamated sequences. These newly formed genomes can determine the fitness and survival of cells. In bacteria, homologous and non-homologous types of recombination lead to the evolution of new...
Gene Conversion
Other than maintaining genome stability via DNA repair, homologous recombination plays an important role in diversifying the genome. In fact, the recombination of sequences forms the molecular basis of genomic evolution. Random and non-random permutations of genomic sequences create a library of new amalgamated sequences. These newly formed genomes can determine the fitness and survival of cells. In bacteria, homologous and non-homologous types of recombination lead to the evolution of new...


