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Related Experiment Video

Updated: Jul 5, 2026

Isolation of Culturable Yeasts and Molds from Soils to Investigate Fungal Population Structure

Isolation of Culturable Yeasts and Molds from Soils to Investigate Fungal Population Structure

Published on: May 27, 2022

Aspergillus strain typing in the genomics era.

C H W Klaassen¹, N Osherov

¹Department of Medical Microbiology and Infectious Diseases, Canisius Wilhelmina Hospital, Nijmegen, The Netherlands.

Studies in Mycology

|May 21, 2008

Summary

Strain typing methods, enhanced by whole genome sequencing, help understand epidemiological links between microbial isolates. These methods also aid in identifying and validating fungal species.

Keywords:

AFLP MLST coding tandem repeats high resolution typing identification pathogenic aspergilli

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Genotyping of Staphylococcus aureus by Ribosomal Spacer PCR (RS-PCR)

Genotyping of Staphylococcus aureus by Ribosomal Spacer PCR (RS-PCR)

Published on: November 4, 2016

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Last Updated: Jul 5, 2026

Isolation of Culturable Yeasts and Molds from Soils to Investigate Fungal Population Structure

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Published on: May 27, 2022

Genotyping of Staphylococcus aureus by Ribosomal Spacer PCR (RS-PCR)

Genotyping of Staphylococcus aureus by Ribosomal Spacer PCR (RS-PCR)

Published on: November 4, 2016

Area of Science:

Microbiology
Genomics
Epidemiology

Background:

Strain typing is crucial for understanding microbial isolate relationships.
Whole genome sequencing (WGS) has revolutionized molecular typing.

Purpose of the Study:

To explore the utility of WGS-driven strain typing methods.
To highlight the dual role of strain typing in epidemiology and species delineation.

Main Methods:

Leveraging whole genome sequencing data.
Developing and applying targeted strain typing methodologies.

Main Results:

WGS enables highly specific and efficient strain typing.
Strain typing effectively delineates epidemiological connections.
Methods can assist in fungal species recognition and validation.

Conclusions:

Whole genome sequencing significantly enhances strain typing capabilities.
Strain typing serves critical roles in both epidemiological surveillance and fungal taxonomy.