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Updated: Jul 4, 2026

Generating the Transcriptional Regulation View of Transcriptomic Features for Prediction Task and Dark Biomarker Detection on Small Datasets
Published on: March 1, 2024
RAS and PKA pathways in cancer: new insight from transcriptional analysis
Ferdinando Chiaradonna1, Chiara Balestrieri, Daniela Gaglio
1Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza 2, 20126 Milan, Italy. ferdinando.chiararadonna@unimib.it
Abstract:
Through its ability to regulate the activity of a large number of transcription factors, the Ras pathway is able to control several transcriptional programs leading to proliferation, differentiation, metabolism, cytoskeletal reorganization and immune response. Cyclic AMP (cAMP) is a ubiquitous intracellular second messenger whose major intracellular target in eukaryotes is protein kinase A (PKA). Wide evidence for cross talk between the Ras and cAMP-PKA pathways is available. After reviewing some features of Ras and PKA signalling that are relevant for cancer biology, we re-analyze available genome-wide expression data for genes encoding proteins of the downstream branch of the PKA pathway in human tumor cell lines as a function of the mutational state of the Ras pathway. The observed Ras-dependent pattern of regulation of the analyzed genes may contribute to explain how the cAMP-PKA axis is involved in oncogenic processes induced by Ras.
Insights
The Ras pathway influences cell functions by regulating transcription factors. Cross-talk between Ras and cyclic AMP-protein kinase A (cAMP-PKA) signaling impacts cancer, with Ras mutations altering PKA pathway gene expression.
Area of Science:
- Molecular Biology
- Cell Signaling
- Oncology
Background:
- The Ras pathway regulates critical cellular processes including proliferation, differentiation, metabolism, and immune response.
- Cyclic AMP (cAMP) acts as a second messenger, primarily activating protein kinase A (PKA) in eukaryotes.
- Significant cross-talk exists between the Ras and cAMP-PKA signaling pathways, with implications for cancer biology.
Purpose of the Study:
- To review the roles of Ras and PKA signaling in cancer.
- To re-analyze genome-wide expression data for PKA pathway genes in human tumor cell lines.
- To investigate the relationship between Ras pathway mutational status and PKA pathway gene regulation.
Main Methods:
- Literature review of Ras and PKA signaling in cancer.
- Bioinformatic analysis of publicly available genome-wide gene expression data.
- Correlation analysis between Ras pathway mutations and expression levels of downstream PKA pathway genes.
Main Results:
- Ras pathway mutations are associated with distinct expression patterns of genes in the downstream PKA pathway.
- Specific genes within the PKA signaling cascade show Ras-dependent regulation in human tumors.
- These findings highlight a molecular link between Ras and cAMP-PKA signaling in oncogenesis.
Conclusions:
- The Ras pathway significantly influences the expression of cAMP-PKA pathway components.
- This Ras-dependent regulation of the cAMP-PKA axis may contribute to Ras-driven oncogenic processes.
- Understanding this interplay is crucial for deciphering the role of cAMP-PKA signaling in cancer.
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