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Updated: Jul 4, 2026

Reverse Yeast Two-hybrid System to Identify Mammalian Nuclear Receptor Residues that Interact with Ligands and/or Antagonists
Published on: November 15, 2013
The nuclear receptor Rev-erbalpha is a liver X receptor (LXR) target gene driving a negative feedback loop on select
Coralie Fontaine1, Elena Rigamonti, Benoit Pourcet
1Institut National de la Santé et de la Recherche Médicale, Unité 545, Institut Pasteur de Lille, 1, rue du Professeur Calmette, Boite Postale 245, Lille 59019, France.
Abstract:
A role of the nuclear receptor Rev-erbalpha in the regulation of transcription pathways involving other nuclear receptors is emerging. Indeed, Rev-erbalpha is a negative regulator of transcription by binding to overlapping response elements shared with various nuclear receptors, including the peroxisome proliferator-activated receptors and the retinoid-related orphan receptor alpha (RORalpha). Here, we show that Rev-erbalpha is expressed in primary human macrophages and that its expression is induced by synthetic ligands for the liver X receptors (LXRs), which control cholesterol homeostasis, inflammation, and the immune response in macrophages. LXRalpha binds to a specific response element in the human Rev-erbalpha promoter, thus inducing Rev-erbalpha transcriptional expression. Interestingly, Rev-erbalpha does not influence basal or LXR-regulated cholesterol homeostasis. However, Rev-erbalpha overexpression represses the induction of toll-like receptor (TLR)-4 by LXR agonists, whereas Rev-erbalpha silencing by short interfering RNA results in enhanced TLR-4 expression upon LXR activation. Electrophoretic mobility shift, chromatin immunoprecipitation, and transient transfection experiments demonstrate that Rev-erbalpha represses human TLR-4 promoter activity by binding as a monomer to a RevRE site overlapping with the LXR response element site in the TLR-4 promoter. These data identify Rev-erbalpha as a new LXR target gene, inhibiting LXR-induction of TLR-4 in a negative transcriptional feedback loop, but not cholesterol homeostasis gene expression.
Insights
Rev-erbalpha, a nuclear receptor, acts as a negative regulator in macrophages. It inhibits liver X receptor (LXR)-induced toll-like receptor 4 (TLR-4) expression, establishing a feedback loop.
Area of Science:
- Molecular Biology
- Immunology
- Endocrinology
Background:
- Nuclear receptors like Rev-erbalpha regulate transcription, often interacting with other nuclear receptors.
- Rev-erbalpha acts as a transcriptional repressor, binding to response elements shared with receptors such as peroxisome proliferator-activated receptors and RORalpha.
- Liver X receptors (LXRs) are crucial regulators of cholesterol homeostasis, inflammation, and immune responses in macrophages.
Purpose of the Study:
- To investigate the role of Rev-erbalpha in human macrophages.
- To determine if Rev-erbalpha expression is regulated by LXR agonists.
- To elucidate the effect of Rev-erbalpha on LXR-mediated gene expression, specifically toll-like receptor 4 (TLR-4) and cholesterol homeostasis.
Main Methods:
- Expression analysis of Rev-erbalpha in primary human macrophages.
- Chromatin immunoprecipitation (ChIP) and electrophoretic mobility shift assays (EMSA) to study protein-DNA interactions.
- Transient transfection experiments to assess promoter activity.
- Short interfering RNA (siRNA) for Rev-erbalpha gene silencing.
Main Results:
- Rev-erbalpha is expressed in human macrophages and its expression is induced by LXR ligands.
- LXRalpha directly binds to the Rev-erbalpha promoter, inducing its transcription.
- Rev-erbalpha overexpression represses LXR-induced TLR-4 expression, while Rev-erbalpha silencing enhances it.
- Rev-erbalpha binds to the TLR-4 promoter, repressing its activity, but does not affect cholesterol homeostasis genes.
Conclusions:
- Rev-erbalpha is identified as a novel LXR target gene in macrophages.
- Rev-erbalpha establishes a negative transcriptional feedback loop by inhibiting LXR-induced TLR-4 expression.
- Rev-erbalpha's regulatory role in this feedback loop does not extend to LXR-regulated cholesterol homeostasis genes.
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