Controlling receptor downregulation by ubiquitination and deubiquitination
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Updated: Jul 4, 2026

In Vitro Ubiquitination and Deubiquitination Assays of Nucleosomal Histones
Published on: July 25, 2019
1Department of Biological Sciences, Tokyo Institute of Technology, 4259-B-16 Nagatsuta, Midori-ku, Yokohama 226-8501, Japan. makomada@bio.titech.ac.jp
Abstract:
Growth factor-activated receptor tyrosine kinases (RTKs) undergo rapid endocytosis and degradation in lysosomes. This process, known as receptor downregulation, is essential to prevent the overgrowth of cells by terminating signal transduction from activated RTKs. Thus, defects in RTK downergulation lead to cell proliferative disorders such as cancer. Upon endocytosis, RTKs are delivered to endosomes, from where they are further transported to lysosomes. Ubiquitin serves as a sorting signal that is tagged on activated RTKs and directs their trafficking from endosomes to lysosomes. On the endosomal membrane, ubiquitinated RTKs are sorted by coordinated actions of the class E vacuolar protein sorting (Vps) proteins some of which form complexes that directly recognize the ubiquitin moieties of RTKs. UBPY and AMSH in mammals, as well as Doa4 in yeast, are deubiquitinating enzymes (DUBs) that associate with class E Vps proteins on endosomes. Here I review the recently unveiled roles and regulatory mechanisms of these DUBs in the endosomal sorting of ubiquitinated cargo proteins. These findings suggest that RTK downregulation is controlled not only by ubiquitination but also by deubiquitination of RTKs as well as other endosomal proteins. Therefore, elucidating the entire functions and regulation of the endosomal DUBs potentially provides novel molecular targets for the treatment of cancer accompanied by overexpression or constitutive activation of RTKs.
Insights
Receptor downregulation, crucial for preventing cell overgrowth and cancer, involves receptor tyrosine kinases (RTKs) being tagged with ubiquitin for lysosomal degradation. Deubiquitinating enzymes (DUBs) on endosomes also regulate this process, offering potential cancer treatment targets.
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- Receptor tyrosine kinases (RTKs) activate signaling pathways, and their downregulation prevents uncontrolled cell proliferation.
- Defects in RTK downregulation are linked to various cancers.
- RTKs are endocytosed and trafficked to lysosomes for degradation, a process critical for signal termination.
Purpose of the Study:
- To review the roles and regulatory mechanisms of deubiquitinating enzymes (DUBs) in the endosomal sorting of ubiquitinated cargo proteins.
- To highlight the importance of DUBs in receptor downregulation.
- To identify potential therapeutic targets for RTK-driven cancers.
Main Methods:
- Review of existing literature on DUBs, endosomal sorting, and RTK downregulation.
- Analysis of the roles of specific DUBs (UBPY, AMSH, Doa4) in ubiquitinated protein trafficking.
- Examination of the interplay between ubiquitination and deubiquitination in receptor sorting.
Main Results:
- Ubiquitin tagging of activated RTKs signals their transport from endosomes to lysosomes.
- Class E vacuolar protein sorting (Vps) proteins coordinate the sorting of ubiquitinated RTKs on endosomes.
- Deubiquitinating enzymes (DUBs) like UBPY, AMSH, and Doa4 associate with endosomal Vps proteins and regulate cargo protein sorting.
- RTK downregulation is controlled by both ubiquitination and deubiquitination processes.
Conclusions:
- Endosomal DUBs play a critical role in regulating RTK downregulation and overall protein trafficking.
- The interplay between ubiquitination and deubiquitination is essential for precise control of RTK signaling.
- Targeting endosomal DUBs may offer novel therapeutic strategies for cancers characterized by RTK overexpression or activation.
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