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Related Concept Videos

X-ray Crystallography02:18

X-ray Crystallography

The size of the unit cell and the arrangement of atoms in a crystal may be determined from measurements of the diffraction of X-rays by the crystal, termed X-ray crystallography.
Diffraction
Diffraction is the change in the direction of travel experienced by an electromagnetic wave when it encounters a physical barrier whose dimensions are comparable to those of the wavelength of the light. X-rays are electromagnetic radiation with wavelengths about as long as the distance between neighboring...

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High throughput crystallography at SGC Toronto: an overview.

Alexey Bochkarev1, Wolfram Tempel

  • 1Structural Genomics Consortium, University of Toronto, Toronto, ON, Canada.

Methods in Molecular Biology (Clifton, N.J.)
|June 11, 2008
PubMed
Summary
This summary is machine-generated.

The Structural Genomics Consortium (SGC) analyzes human protein families to develop therapeutic reagents. Their family-based approach and high-throughput methods offer a model for structural biology laboratories.

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Area of Science:

  • Structural biology
  • Genomics
  • Biochemistry

Background:

  • The completion of the human genome enables analysis of biological systems through entire gene families.
  • Enzyme studies can explore complex substrate specificity networks with overlapping specificities within and between protein families.

Purpose of the Study:

  • To determine the structures of proteins relevant to human health.
  • To place protein structures into the public domain without restrictions.
  • To develop a family-based approach for protein studies, particularly for therapeutic reagent development.

Main Methods:

  • Crystallography methods tailored for human protein families.
  • Increased reliance on in-house X-ray sources for diffraction data collection.
  • Predominant use of molecular replacement for phase determination.
  • High-throughput (HTP) sample and data flow management.

Main Results:

  • The SGC's approach differs from structural genomics projects focused on protein fold space.
  • The SGC's methods are becoming an increasingly useful model for structural biology laboratories.
  • Technical details of HTP workflow at SGC Toronto are presented.

Conclusions:

  • A family-based approach to protein studies is compelling for exploiting specificities.
  • The SGC's methodology provides a paradigm for collaborative or shared X-ray instrumentation facilities.
  • The SGC's work contributes significantly to understanding human health-related proteins.