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Updated: Jul 4, 2026

Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
Cell cycle-dependent phosphorylation of human CDC5 regulates RNA processing
Remo Gräub1, Hope Lancero, Anissa Pedersen
1Cardiovascular Research Institute, University of California, San Francisco, CA 94143-0130, USA.
Abstract:
CDC5 proteins are components of the pre-mRNA splicing complex and essential for cell cycle progression in yeast, plants and mammals. Human CDC5 is phosphorylated in a mitogen-dependent manner, and its association with the spliceosome is ATP-dependent. Examination of the amino acid sequence suggests that CDC5L may be phosphorylated at up to 28 potential consensus recognition sequences for known kinases, however, the identity of actual phosphorylation sites, their role in regulating CDC5L activity, and the kinases responsible for their phosphorylation have not previously been determined. Using two-dimensional phosphopeptide mapping and nanoelectrospray mass spectrometry, we now show that CDC5L is phosphorylated on at least nine sites in vivo. We demonstrate that while CDC5L is capable of forming homodimers in vitro and in vivo, neither homodimerization nor nuclear localization is dependent on phosphorylation at these sites. Using an in vitro splicing assay, we show that phosphorylation of CDC5L at threonines 411 and 438 within recognition sequences for CDKs are required for CDC5L-mediated pre-mRNA splicing. We also demonstrate that a specific inhibitor of CDK2, CVT-313, inhibits CDC5L phosphorylation in both in vitro kinase assays and in vivo radiolabeling experiments in cycling cells. These studies represent the first demonstration of a regulatory role for phosphorylation of CDC5L, and suggest that targeting these sites or the implicated kinases may provide novel strategies for treating disorders of unguarded cellular proliferation, such as cancer.
Insights
CDC5L phosphorylation is crucial for pre-mRNA splicing, with specific CDK-dependent sites regulating this process. Targeting these sites offers potential cancer treatment strategies.
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- CDC5 proteins are vital spliceosome components regulating cell cycle progression.
- Human CDC5L has numerous potential phosphorylation sites, but their roles and regulators were unknown.
Purpose of the Study:
- To identify CDC5L phosphorylation sites and determine their role in regulating CDC5L activity and pre-mRNA splicing.
- To investigate the kinases responsible for CDC5L phosphorylation and their potential therapeutic implications.
Main Methods:
- Two-dimensional phosphopeptide mapping and nanoelectrospray mass spectrometry to identify phosphorylation sites.
- In vitro splicing assays to assess the functional impact of phosphorylation.
- In vitro kinase assays and in vivo radiolabeling experiments using CDK2 inhibitor CVT-313.
Main Results:
- CDC5L is phosphorylated on at least nine sites in vivo.
- Phosphorylation is not required for CDC5L homodimerization or nuclear localization.
- Phosphorylation at threonines 411 and 438 is essential for CDC5L-mediated pre-mRNA splicing.
- CDK2 inhibition blocks CDC5L phosphorylation.
Conclusions:
- This study demonstrates the regulatory role of CDC5L phosphorylation in pre-mRNA splicing.
- Specific CDK-dependent phosphorylation sites on CDC5L are critical for its function.
- Targeting CDC5L phosphorylation sites or associated kinases may offer new therapeutic avenues for cancer treatment.
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