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Related Concept Videos

RNA-seq03:21

RNA-seq

RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while microarray-based...
Genome Annotation and Assembly03:36

Genome Annotation and Assembly

The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
Genomics02:02

Genomics

Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
Synthetic Biology02:55

Synthetic Biology

Synthetic biology is an interdisciplinary science that involves using principles from disciplines such as engineering, molecular biology, cell biology, and systems biology. It involves remodeling existing organisms from nature or constructing completely new synthetic organisms for applications such as protein or enzyme production, bioremediation, value-added macromolecule production, and the addition of desirable traits to crops, to name a few.
Golden rice
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Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
Plant Breeding and Biotechnology01:59

Plant Breeding and Biotechnology

Crop cultivation has a long history in human civilization, with records showing the cultivation of cereal plants beginning at around 8000 BC. This early plant breeding was developed primarily to provide a steady supply of food.

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Breeding by Design for Functional Rice with Genome Editing Technologies
09:43

Breeding by Design for Functional Rice with Genome Editing Technologies

Published on: January 3, 2025

Development in rice genome research based on accurate genome sequence.

Takashi Matsumoto1, Jianzhong Wu, Baltazar A Antonio

  • 1National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan. mat@nias.affrc.go.jp <mat@nias.affrc.go.jp>

International Journal of Plant Genomics
|June 28, 2008
PubMed
Summary

The completion of the high-quality rice genome sequence accelerates molecular breeding. This genomic information is crucial for understanding cereal genome function and comparative genomics.

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Area of Science:

  • Genomics
  • Plant Breeding
  • Comparative Genomics

Background:

  • Rice is a globally significant crop.
  • Genetic improvement is vital for accelerated rice breeding.
  • Limited genome information previously hindered molecular breeding efforts.

Purpose of the Study:

  • To highlight the impact of the high-quality rice genome sequence completion.
  • To emphasize the value of rice genome information for understanding cereal genomes.
  • To underscore the importance of accurate genome sequencing for comparative genomics.

Main Methods:

  • High-quality genome sequencing of rice.
  • Comparative analysis of rice genome synteny with other cereal genomes.
  • Examination of sequence deviations within and among species.

Main Results:

  • The completion of the rice genome sequence has opened new avenues in genomics research.
  • The rice genome's syntenic relationship provides insights into cereal genome function.
  • Sequence variations have implications for functional and evolutionary studies.

Conclusions:

  • The availability of a high-quality rice genome sequence is transformative for plant breeding and genomics.
  • Comparative genomics benefits significantly from accurate genome sequences.
  • Understanding genome variations is key to evolutionary and functional insights.