Development of a real-time quantitative PCR assay to enumerate Yersinia pestis in fleas
Elizabeth S Gabitzsch1, Rommelle Vera-Tudela, Rebecca J Eisen
1Centers for Disease Control and Prevention, Division of Vector-Borne Infectious Diseases, Fort Collins, Colorado 80521, USA.
Abstract:
A real-time quantitative polymerase chain reaction (qPCR) assay was developed for Yersina pestis. The qPCR assay was developed utilizing a conserved region of the Y. pestis ferric iron uptake regulator gene (fur) to design primers and a fluorescent (FAM-labeled) TaqMan probe. The assay was optimized using cultured Y. pestis (UG05-0454) and was confirmed to work with strains from 3 Y. pestis biovars. The optimized assay was capable of detecting a single organism of cultured Y. pestis and as little as 300 bacteria in infected flea triturates. This qPCR assay enables rapid enumeration of Y. pestis bacterium in laboratory-infected fleas when compared with conventional serial dilution plating.
Insights
A new real-time quantitative polymerase chain reaction (qPCR) assay accurately detects Yersinia pestis. This rapid method allows for quick identification and counting of Yersinia pestis bacteria in fleas.
Area of Science:
- Microbiology
- Molecular Biology
- Infectious Diseases
Background:
- Yersinia pestis is the causative agent of plague.
- Accurate and rapid detection methods for Yersinia pestis are crucial for disease control.
- Conventional methods for bacterial enumeration can be time-consuming.
Purpose of the Study:
- To develop and optimize a real-time quantitative polymerase chain reaction (qPCR) assay for the detection and enumeration of Yersinia pestis.
- To validate the assay's performance using cultured strains and infected flea samples.
Main Methods:
- Design of primers and a TaqMan probe targeting a conserved region of the Yersinia pestis ferric iron uptake regulator (fur) gene.
- Optimization of the qPCR assay using cultured Yersinia pestis.
- Validation of the assay with multiple Yersinia pestis biovars and in infected flea triturates.
Main Results:
- The developed qPCR assay successfully detected Yersinia pestis.
- The assay demonstrated high sensitivity, detecting as few as 300 bacteria in infected flea triturates.
- The assay was confirmed to be effective across three Yersinia pestis biovars.
Conclusions:
- A sensitive and specific real-time qPCR assay for Yersinia pestis has been established.
- This assay enables rapid and accurate enumeration of Yersinia pestis in laboratory settings, particularly in infected fleas.
- The qPCR method offers a significant advantage over traditional culture-based techniques for Yersinia pestis quantification.
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