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Updated: Jul 3, 2026

Performing Data Mining And Integrative Analysis Of Biomarker in Breast Cancer Using Multiple Publicly Accessible Databases
Published on: May 17, 2019
Looking for cancer clues in publicly accessible databases
Djamel Medjahed1, Peter F Lemkin, Gary W Smythers
1National Cancer Institute at Frederick, 915 Tollhouse Avenue, Frederick, MD 21701, USA. medjahed@ncifcrf.gov
Abstract:
What started out as a mere attempt to tentatively identify proteins in experimental cancer-related 2D-PAGE maps developed into VIRTUAL2D, a web-accessible repository for theoretical pI/MW charts for 92 organisms. Using publicly available expression data, we developed a collection of tissue-specific plots based on differential gene expression between normal and diseased states. We use this comparative cancer proteomics knowledge base, known as the tissue molecular anatomy project (TMAP), to uncover threads of cancer markers common to several types of cancer and to relate this information to established biological pathways.
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