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Updated: Jul 3, 2026

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
Ontology-based interactive information extraction from scientific abstracts
David Milward1, Marcus Bjäreland, William Hayes
1Linguamatics Ltd, St. John's Innovation Centre, Cambridge CB4 0WS, UK. david.milward@linguamatics.com
Abstract:
Over recent years, there has been a growing interest in extracting information automatically or semi-automatically from the scientific literature. This paper describes a novel ontology-based interactive information extraction (OBIIE) framework and a specific OBIIE system. We describe how this system enables life scientists to make ad hoc queries similar to using a standard search engine, but where the results are obtained in a database format similar to a pre-programmed information extraction engine. We present a case study in which the system was evaluated for extracting co-factors from EMBASE and MEDLINE.
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