Related Experiment Video
Updated: Jul 3, 2026

Array Comparative Genomic Hybridization (Array CGH) for Detection of Genomic Copy Number Variants
Published on: February 21, 2015
Subtelomeric 6p deletion: clinical and array-CGH characterization in two patients
Danielle Martinet1, Isabel Filges, Nathalie Besuchet Schmutz
1Service of Medical Genetics, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland. danielle.martinet@chuv.ch
Insights
Two patients presented with de novo subtelomeric terminal deletion of chromosome 6p, revealing complex rearrangements. These cases highlight the importance of advanced genomic analysis for accurate diagnosis and understanding genotype-phenotype correlations in 6p deletion syndrome.
Area of Science:
- Genetics
- Human Genetics
- Clinical Genetics
Background:
- Subtelomeric terminal deletions of chromosome 6p can lead to significant developmental abnormalities.
- Accurate characterization of these deletions is crucial for understanding genotype-phenotype correlations.
Observation:
- Two patients with de novo subtelomeric terminal deletion of chromosome 6p were analyzed.
- Patient 1 exhibited severe developmental delay, deafness, and hypsarrhythmia.
- Patient 2 presented with characteristic facial features, embryotoxon, and moderate mental retardation.
Findings:
- High-resolution array comparative genomic hybridization (array-CGH) revealed complex rearrangements in both patients.
- Patient 1 had a 6pter-6p24.3 deletion with a contiguous 6p24.3-6p24.1 duplication.
- Patient 2 had a 6pter-6p25.1 deletion partially overlapping with Patient 1's deletion.
Implications:
- Simple chromosomal rearrangements can be more complex than initially detected by standard techniques.
- Advanced genomic analyses like array-CGH are essential for precise characterization of deletions.
- Understanding these complex rearrangements aids in predicting clinical outcomes and genetic counseling for 6p deletion syndrome.
Abstract:
We report on two patients with de novo subtelomeric terminal deletion of chromosome 6p. Patient 1 is an 8-month-old female born with normal growth parameters, typical facial features of 6pter deletion, bilateral corectopia, and protruding tongue. She has severe developmental delay, profound bilateral neurosensory deafness, poor visual contact, and hypsarrhythmia since the age of 6 months. Patient 2 is a 5-year-old male born with normal growth parameters and unilateral hip dysplasia; he has a characteristic facial phenotype, bilateral embryotoxon, and moderate mental retardation. Further characterization of the deletion, using high-resolution array comparative genomic hybridization (array-CGH; Agilent Human Genome kit 244 K), revealed that Patient 1 has a 8.1 Mb 6pter-6p24.3 deletion associated with a contiguous 5.8 Mb 6p24.3-6p24.1 duplication and Patient 2 a 5.7 Mb 6pter-6p25.1 deletion partially overlapping with that of Patient 1. Complementary FISH and array analysis showed that the inv del dup(6) in Patient 1 originated de novo. Our results demonstrate that simple rearrangements are often more complex than defined by standard techniques. We also discuss genotype-phenotype correlations including previously reported cases of deletion 6p.
Related Concept Videos
Karyotyping
Karyotyping

