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Updated: Jul 3, 2026

Multi-Gene Single Nucleotide Polymorphism Detection in Gastric Cancer Based on Ion Semiconductor Sequencing Platform
Published on: May 10, 2024
[Genetic polymorphisms related to fluoropyrimidine sensitivity and toxicity]
1Division of Gastric Surgery, Shizuoka Cancer Center, Sunto-gun, Shizuoka, Japan.
Abstract:
Fluoropyrimidine such as 5-fluorouracil(5-FU)exerts its antitumor activities via anabolism by several enzymes. Genetic polymorphisms of these enzymes related to sensitivity and toxicity of fluoropyrimidines are reviewed. Expression of thymidylate synthase(TS), a target enzyme of 5-FU, is regulated by variable number of a 28 bp tandem repeat in the enhancer region. The double tandem repeat is associated with low TS expression, and consequently, patients with double tandem repeat demonstrated higher sensitivity to 5-FU than those with triple tandem repeat. Single nucleotide polymorphism within the second tandem repeat and loss of heterozygosity are also reported to be related to fluoropyrimidine sensitivity. In addition, patients having a 6 bp deletion in 3'-UTR region showed remarkably high antitumor activity by 5-FU based chemotherapy. Genetic variations in 5-FU catabolic enzymes can also have a profound effect on 5-FU toxicity. So far 39 mutations/ polymorphisms have been identified in dihydropyrimidine dehydrogenase(DPD)gene, a major catabolic enzyme of 5- FU. Among them, IVS14+1G>A is reported to be highly associated with severe toxicity caused by chemotherapy with fluoropyrimidine. A polymorphism that may influence the efficacy of 5-FU by influencing folate pools is that of the methylenetetrahydrofolate reductase(MTHFR)gene. C677T mutation was associated with a higher response rate on 5-FU/folinic acid chemotherapy. Prospective clinical trials to confirm the predictability of genetic polymorphism for sensitivity and toxicity of 5-FU should be performed.
Insights
Genetic variations in key enzymes affect how patients respond to 5-fluorouracil (5-FU) chemotherapy, influencing both its effectiveness and potential toxicity. Understanding these genetic polymorphisms can personalize cancer treatment strategies.
Area of Science:
- Pharmacogenomics
- Cancer Therapeutics
- Molecular Biology
Context:
- Fluoropyrimidines, like 5-fluorouracil (5-FU), are widely used anticancer drugs.
- Their efficacy and toxicity are influenced by genetic variations in metabolic enzymes.
- Understanding these variations is crucial for optimizing patient outcomes.
Purpose:
- To review the impact of genetic polymorphisms on the sensitivity and toxicity of fluoropyrimidine-based chemotherapy.
- To highlight specific genetic markers associated with 5-FU efficacy and adverse events.
- To emphasize the need for clinical trials to validate genetic predictors.
Summary:
- Genetic polymorphisms in thymidylate synthase (TS), dihydropyrimidine dehydrogenase (DPD), and methylenetetrahydrofolate reductase (MTHFR) significantly affect 5-FU activity.
- Variations such as tandem repeat numbers in the TS enhancer, 3'-UTR deletions, DPD mutations (e.g., IVS14+1G>A), and MTHFR C677T influence patient response and toxicity.
- These genetic factors can predict higher sensitivity, increased antitumor activity, or severe toxicity.
Impact:
- Personalized chemotherapy regimens based on individual genetic profiles can be developed.
- Improved prediction of 5-FU efficacy and toxicity will enhance treatment safety and effectiveness.
- Clinical trials are needed to prospectively validate these genetic markers for routine use in cancer treatment planning.
Related Concept Videos
Pharmacogenetics of Drug Targets: β₂-Adrenergic Receptors, Apo E, Thymidylate Synthase
Pharmacogenetic Phenotypes: Alterations in Pharmacokinetics, Drug Targets and Biologic Milieu
Pharmacogenetics of Phase II Enzymes: N-acetyltransferase, Thiopurine S-methyltransferase, UDP-glucuronosyltransferase
Pharmacogenetics of Drug Metabolism: Overview
Principles of Pharmacogenetics: Types of Genetic Variants
Drug toxicity: Idiosyncratic Reactions
