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Updated: Jul 3, 2026

Extracting Modified Microtubules from Mammalian Cells to Study Microtubule-Protein Complexes by Cryo-Electron Microscopy
Published on: March 3, 2023
Proteomic characterization of cytoskeletal and mitochondrial class III beta-tubulin
Lucia Cicchillitti1, Roberta Penci, Michela Di Michele
1Department of Oncology, Catholic University of the Sacred Heart, Largo A. Gemelli, 1-86100, Campobasso, Italy.
Abstract:
Class III beta-tubulin (TUBB3) has been discovered as a marker of drug resistance in human cancer. To get insights into the mechanisms by which this protein is involved in drug resistance, we analyzed TUBB3 in a panel of drug-sensitive and drug-resistant cell lines. We identified two main different isoforms of TUBB3 having a specific electrophoretic profile. We showed that the apparently higher molecular weight isoform is glycosylated and phosphorylated and it is localized in the cytoskeleton. The apparently lower molecular weight isoform is instead found exclusively in mitochondria. We observed that levels of phosphorylation and glycosylation of TUBB3 are associated with the resistant phenotype and compartmentalization into cytoskeleton. By two-dimensional nonreduced/reduced SDS-PAGE analysis, we also found that TUBB3 protein in vivo forms protein complexes through intermolecular disulfide bridges. Through TUBB3 immunoprecipitation, we isolated protein species able to interact with TUBB3. Following trypsin digestion, these proteins were characterized by mass spectrometry analysis. Functional analysis revealed that these proteins are involved in adaptation to oxidative stress and glucose deprivation, thereby suggesting that TUBB3 is a survival factor able to directly contribute to drug resistance. Moreover, glycosylation of TUBB3 could represent an attractive pathway whose inhibition could hamper cytoskeletal compartmentalization and TUBB3 function.
Insights
Class III beta-tubulin (TUBB3) is linked to cancer drug resistance. Its modifications and interactions suggest it acts as a survival factor, offering new therapeutic targets.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- Class III beta-tubulin (TUBB3) is an established marker for drug resistance in human cancers.
- Understanding the precise mechanisms of TUBB3's role in drug resistance is crucial for developing novel therapeutic strategies.
Purpose of the Study:
- To investigate the molecular mechanisms underlying TUBB3's involvement in cancer drug resistance.
- To identify and characterize TUBB3 isoforms and their functional roles in drug-resistant cells.
Main Methods:
- Analysis of TUBB3 in drug-sensitive and drug-resistant cell lines using electrophoretic techniques.
- Isoform characterization via glycosylation and phosphorylation analysis, subcellular localization studies.
- Protein complex identification using 2D SDS-PAGE, immunoprecipitation, and mass spectrometry.
Main Results:
- Two distinct TUBB3 isoforms were identified with different electrophoretic profiles.
- A higher molecular weight isoform, glycosylated and phosphorylated, localized to the cytoskeleton; a lower molecular weight isoform localized to mitochondria.
- Phosphorylation and glycosylation levels correlated with drug resistance and cytoskeletal localization.
- TUBB3 forms protein complexes via disulfide bridges, interacting with proteins involved in oxidative stress and glucose deprivation adaptation.
- These interacting proteins suggest TUBB3 functions as a survival factor.
Conclusions:
- TUBB3's post-translational modifications (glycosylation, phosphorylation) and compartmentalization are associated with cancer drug resistance.
- TUBB3 interacts with proteins that promote survival under stress, directly contributing to drug resistance.
- Targeting TUBB3 glycosylation may inhibit its cytoskeletal function and overcome drug resistance.
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