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Updated: Jul 3, 2026

Measuring Single-Cell Mitochondrial DNA Copy Number and Heteroplasmy Using Digital Droplet Polymerase Chain Reaction
Published on: July 12, 2022
Mitochondrial DNA deletions in skin from melanoma patients
Karen Hubbard1, Mark L Steinberg, Helene Hill
1Department of Biology, The City College of New York, Convent Ave and 160th St, New York, NY 10031, USA.
Abstract:
We measured the cellular levels of two types of mitochondrial DNA (mtDNA) deletions--the 4977-bp common deletion and recently identified UVB-induced deletion of 5128 bp--in apparently normal skin obtained from wide excisions in melanoma patients. The number of deleted mtDNAs as well as the total mtDNA copy number was highly variable, but the number of deletions increased with age of the donor almost 12-fold across the age range of the patients. Patients were scored for degree of overall pigmentation and response to sunlight by a phenotypic index (PI). The relative levels of both types of mtDNA deletions were much more abundant in the intermediate PI groups compared with either the low or high PI groups. In the intermediate PI group, melanomas were also seen later in life. Unexpectedly, the complement of total mitochondrial genomes was more than twofold higher in the low PI group than in the other PI groups. This may reflect a proliferative response to DNA damage induced by solar radiation in the high-risk group.
Insights
Mitochondrial DNA deletions increase with age in skin cells. Abundance of these deletions varies with skin pigmentation and sun response, impacting melanoma risk.
Area of Science:
- Genetics
- Dermatology
- Molecular Biology
Background:
- Mitochondrial DNA (mtDNA) deletions are implicated in aging and disease.
- UV radiation is a known risk factor for melanoma.
- The relationship between mtDNA deletions, skin type, and melanoma risk requires further investigation.
Purpose of the Study:
- To quantify common and UVB-induced mtDNA deletions in normal skin of melanoma patients.
- To investigate the correlation between mtDNA deletion levels, age, and phenotypic characteristics related to sun exposure.
- To explore the potential role of mtDNA copy number variations in melanoma risk.
Main Methods:
- Quantification of 4977-bp common deletion and 5128-bp UVB-induced deletion in skin mtDNA.
- Assessment of total mtDNA copy number.
- Classification of patients based on a phenotypic index (PI) reflecting pigmentation and sun response.
Main Results:
- mtDNA deletions significantly increased with donor age (12-fold across the age range).
- Both deletion types were most abundant in intermediate PI groups, who also developed melanoma later.
- The low PI group exhibited over twofold higher total mtDNA copy number compared to other groups.
Conclusions:
- Age is a significant factor in the accumulation of mtDNA deletions in skin.
- Phenotypic characteristics related to sun sensitivity influence mtDNA deletion levels and potentially melanoma development.
- Elevated mtDNA copy number in low PI individuals may indicate a compensatory response to solar radiation-induced DNA damage.
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