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Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
Genetic structure associated with blaOXA-18, encoding a clavulanic acid-inhibited extended-spectrum oxacillinase
Thierry Naas1, Fatemeh Namdari, Pierre Bogaerts
1Service de Bactériologie-Virologie, INSERM U914, Hôpital de Bicêtre, Le Kremlin-Bicêtre Cedex, France. thierry.naas@bct.aphp.fr
Abstract:
The genetic environment of the bla(OXA-18) gene encoding a peculiar clavulanic acid-inhibitable Ambler class D extended-spectrum beta-lactamase was determined from the prototype OXA-18-producing Pseudomonas aeruginosa MUS clinical isolate. An 8.2-kb genomic DNA fragment containing bla(OXA-18) was cloned from P. aeruginosa MUS. Although most oxacillinases are located in integrons, bla(OXA-18) lacked gene cassette-specific features. It was bracketed by two duplicated sequences containing ISCR19, a novel insertion sequence of the ISCR family of mobile elements; DeltaintI1, a truncated integrase gene; and a truncated Deltaaac6'-Ib gene cassette. It is likely that ISCR19 was at the origin of the bla(OXA-18) gene mobilization by a rolling-circle transposition event followed by homologous recombination. Furthermore, analysis of the cloned genomic DNA fragment revealed the presence of the integron-containing bla(OXA-20) gene. Concomitantly, three P. aeruginosa clinical isolates, displaying a synergy image as determined by double-disk diffusion tests on cloxacillin-containing plates, were isolated from three patients hospitalized in different wards over a 9-month period at the Saint-Luc University hospital (Brussels, Belgium). These isolates were positive by PCR for bla(OXA-18) and bla(OXA-20) genes, genetically related to P. aeruginosa MUS as determined by pulsed-field gel electrophoresis, and carried the same bla(OXA-18)/bla(OXA-20)-associated genetic structures. This report characterized the genetic elements likely at the origin of bla(OXA-18) gene mobilization in P. aeruginosa and suggests the spread of oxacillin-type extended-spectrum beta-lactamases in P. aeruginosa at the Saint-Luc University hospital of Brussels, Belgium.
Insights
The bla(OXA-18) gene, encoding a clavulanic acid-inhibitable extended-spectrum beta-lactamase, was mobilized by a novel insertion sequence ISCR19 in Pseudomonas aeruginosa. This study suggests the spread of oxacillin-type beta-lactamases in a Belgian hospital.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- Extended-spectrum beta-lactamases (ESBLs) are a growing public health concern.
- OXA-type beta-lactamases are a significant class of ESBLs, with OXA-18 being a notable example.
- Understanding the genetic environment of antibiotic resistance genes is crucial for tracking their spread.
Purpose of the Study:
- To determine the genetic environment of the bla(OXA-18) gene in a Pseudomonas aeruginosa clinical isolate.
- To investigate the mechanism of bla(OXA-18) gene mobilization.
- To assess the presence and spread of bla(OXA-18) and bla(OXA-20) in clinical isolates at a Belgian hospital.
Main Methods:
- Cloning of an 8.2-kb genomic DNA fragment containing bla(OXA-18) from P. aeruginosa MUS.
- Characterization of the genetic elements flanking bla(OXA-18), including insertion sequences and gene cassettes.
- Polymerase chain reaction (PCR) and pulsed-field gel electrophoresis (PFGE) to analyze clinical isolates.
Main Results:
- The bla(OXA-18) gene was found to be bracketed by two duplicated ISCR19 insertion sequences, lacking typical integron features.
- A novel mobilization mechanism involving ISCR19, a truncated integrase, and a truncated gene cassette was proposed.
- The bla(OXA-20) gene was also identified within the same genetic structure.
- Three P. aeruginosa clinical isolates from different wards carried identical bla(OXA-18)/bla(OXA-20) genetic structures, suggesting clonal spread.
Conclusions:
- ISCR19 likely mediated the mobilization of the bla(OXA-18) gene through rolling-circle transposition and homologous recombination.
- The study identified the genetic elements responsible for bla(OXA-18) mobilization in P. aeruginosa.
- The findings suggest the dissemination of oxacillin-type ESBLs in P. aeruginosa at Saint-Luc University hospital in Brussels, Belgium.
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