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Updated: Jul 3, 2026

Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Published on: June 27, 2020
E2f3a and E2f3b make overlapping but different contributions to total E2f3 activity
P S Danielian1, L B Friesenhahn, A M Faust
1David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Abstract:
The E2f transcription factors are key downstream targets of the retinoblastoma protein tumor suppressor that control cell proliferation. E2F3 has garnered particular attention because it is amplified in various human tumors. E2f3 mutant mice typically die around birth and E2f3-deficient cells have a proliferation defect that correlates with impaired E2f target gene activation and also induction of p19(Arf) and p53. The E2f3 locus encodes two isoforms, E2f3a and E2f3b, which differ in their N-termini. However, it is unclear how E2f3a versus E2f3b contributes to E2f3's requirement in either proliferation or development. To address this, we use E2f3a- and E2f3b-specific knockouts. We show that inactivation of E2f3a results in a low penetrance proliferation defect in vitro whereas loss of E2f3b has no effect. This proliferation defect appears insufficient to disrupt normal development as E2f3a and E2f3b mutant mice are both fully viable and have no detectable defects. However, when combined with E2f1 mutation, inactivation of E2f3a, but not E2f3b, causes significant proliferation defects in vitro, neonatal lethality and also a striking cartilage defect. Thus, we conclude that E2f3a and E2f3b have largely overlapping functions in vivo and that E2f3a can fully substitute for E2f1 and E2f3 in most murine tissues.
Insights
E2f transcription factors regulate cell proliferation. This study found that E2f3a, but not E2f3b, causes minor proliferation defects, and both isoforms largely overlap in function.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- E2f transcription factors are crucial for cell proliferation and are downstream targets of the retinoblastoma protein.
- E2F3 is frequently amplified in human tumors, highlighting its significance in cancer.
- E2f3 deficiency leads to proliferation defects and impaired target gene activation.
Purpose of the Study:
- To investigate the distinct roles of the two E2f3 isoforms, E2f3a and E2f3b, in cell proliferation and development.
- To determine how E2f3a and E2f3b contribute to the known functions of E2f3.
Main Methods:
- Generation and analysis of E2f3a-specific and E2f3b-specific knockout mice.
- In vitro proliferation assays of E2f3-deficient cells.
- Analysis of combined E2f1 and E2f3a/b mutations.
Main Results:
- Inactivation of E2f3a caused a mild in vitro proliferation defect, while E2f3b deficiency had no effect.
- Mice lacking either E2f3a or E2f3b were viable and showed no developmental defects.
- Combined E2f1 and E2f3a deficiency resulted in significant proliferation defects, neonatal lethality, and cartilage abnormalities.
Conclusions:
- E2f3a and E2f3b exhibit largely overlapping functions in vivo.
- E2f3a can compensate for E2f1 and E2f3 in most murine tissues.
- The distinct roles of E2f3a and E2f3b in proliferation and development are context-dependent.
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