The putative coenzyme B12-dependent methylmalonyl-CoA mutase from potatoes is a phosphatase

Csaba Paizs1, Tanja Diemer, János Rétey

  • 1Department of Biochemistry and Biochemical Engineering, Babeş-Bolyai University, 400028-Arany János 11, Cluj-Napoca (Kolozsvár), Romania.

Bioorganic Chemistry
|August 1, 2008
PubMed

Insights

Potato enzymes do not require coenzyme B12. Research shows the methylmalonyl-CoA mutase enzyme actually converts methylmalonyl-3'-dephospho-CoA, a reaction not dependent on coenzyme B12 or S-adenosylmethionine.

Area of Science:

  • Biochemistry
  • Plant Science
  • Enzymology

Background:

  • Previous studies suggested potatoes possess a coenzyme B12-dependent methylmalonyl-CoA mutase.
  • This enzyme is crucial in various metabolic pathways.

Purpose of the Study:

  • To re-examine the reported presence and function of methylmalonyl-CoA mutase in potatoes.
  • To clarify the enzymatic activity and cofactor requirements in potato metabolism.

Main Methods:

  • Purification of the enzyme converting methylmalonyl-CoA to electrophoretic homogeneity.
  • Analysis of the reaction product using advanced spectroscopic techniques: 1H NMR, 31P NMR, and mass spectrometry.

Main Results:

  • The purified enzyme was identified as a phosphatase, not a mutase.
  • The reaction product was confirmed to be methylmalonyl-3"-dephospho-CoA.
  • The enzyme's activity was found to be independent of coenzyme B12 and S-adenosylmethionine.

Conclusions:

  • Potatoes do not possess a coenzyme B12-dependent methylmalonyl-CoA mutase.
  • The identified enzyme is a phosphatase acting on methylmalonyl-CoA, with distinct cofactor requirements.
  • This finding revises the understanding of specific metabolic pathways in plants.

Related Concept Videos

Protein Kinases and Phosphatases02:54

Protein Kinases and Phosphatases

Proteins undergo chemical modifications that trigger changes in the charge, structure, and conformation of the proteins. Phosphorylation, acetylation, glycosylation, nitrosylation, ubiquitination, lipidation, methylation, and proteolysis are various protein modifications that regulate protein activity. Such modifications are usually enzyme-driven.
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...
Allosteric Proteins-ATCase01:19

Allosteric Proteins-ATCase

Binding sites linkages can regulate a protein's function.  For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to  N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis pathway,...
Covalently Linked Protein Regulators02:04

Covalently Linked Protein Regulators

Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
These groups modify specific amino acids in a protein.
Cofactors and Coenzymes01:27

Cofactors and Coenzymes

Enzymes require additional components for proper function. There are two such classes of molecules: cofactors and coenzymes. Cofactors are metallic ions and coenzymes are non-protein organic molecules. Both of these types of helper molecule can be tightly bound to the enzyme or bound only when the substrate binds.
Cofactors and Coenzymes01:24

Cofactors and Coenzymes

Enzymes are proteins made of amino acids. The functional group of each constituent amino acid catalyzes a wide variety of chemical reactions via ionic interactions or acid-base reactions. However, amino acids cannot catalyze oxidation-reduction and group transfer reactions and need to be aided by non-protein components called cofactors. Cofactors are also referred to as the chemical teeth of an enzyme.
Cofactors can be metallic ions or organic molecules called coenzymes. These types of helper...
Phase II Reactions: Methylation Reactions01:17

Phase II Reactions: Methylation Reactions

Methylation is a phase II biotransformation process involving the attachment of a methyl group to a substrate. Enzymes known as methyltransferases orchestrate this reaction.
The mechanism of methylation unfolds in two stages. The first stage sees a methyltransferase enzyme facilitating the transfer of a methyl group from S-adenosylmethionine (SAM) to the substrate, forming S-adenosylhomocysteine (SAH). The second stage involves further metabolism of SAH into homocysteine, which can be recycled...