Knowledge acquisition and visualization for biomedical research
Related Experiment Video
Updated: Jul 2, 2026

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
Noah Zimmerman1, Stephen Meehan, Leonore A Herzenberg
1Stanford University, Biomedical Informatics, USA.
Abstract:
The TreeTableWidget is a user interface component that allows instances in a knowledge-base to be sorted on the value of one or more of its attributes. Any combination of attributes can be sorted simultaneously by assigning a precedence to each sort. This results in a hierarchy of attributes such that instances can be grouped and visualized according to shared attribute values in a tree view. The resulting tree provides a mechanism to navigate and edit a large number of instances based on attribute values. The component is available as a Protégé slot-widget plug-in.

