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Identification of microphthalmia-associated transcription factor isoforms in dogs
Shuichi Tsuchida1, Takashi Takizawa, Katsunori Abe
1Laboratory of Comparative Cellular Biology, Nippon Veterinary and Life Science University, 1-7-1 Kyonan-cho, Musashino-shi, Tokyo 180-8602, Japan. tsuchida@nvlu.ac.jp
Abstract:
Microphthalmia-associated transcription factor (MITF) belongs to the basic helix-loop-helix leucine zipper (bHLH-LZ) family of transcription factors, and plays an important role in the development and differentiation of melanocytes, mast cells, and osteoclasts. To investigate canine MITF isoforms, cDNA cloning with 5'-rapid amplification of cDNA ends was performed. Three canine isoforms, the counterparts of human MITF-M, MITF-H, and MITF-A, were determined. Canine MITF-M, MITF-H, and MITF-A were highly homologous to the nucleotide sequences in isoform-specific 1M, 1H, and 1A with 100%, 98%, and 97% identity in humans, respectively. When scanning of the canine genome was performed to identify the homologous regions to human MITF isoforms, in addition to MITF-M, MITF-H, and MITF-A isoforms, the homologous sequences to all the other isoforms observed in humans existed in the canine genome sequence of chromosome 20. Comparison of the homologous sequences for MITF isoforms among dogs and humans suggested that MITF-D, MITF-E and MITF-J may be expressed in canine adult tissues in addition to canine MITF-M, MITF-H, and MITF-A. However, RT-PCR showed that canine MITF-E and MITF-J, but not canine MITF-D were expressed. Although the mRNAs encoding canine MITF-H and MITF-A were expressed widely, MITF-M, MITF-E and MITF-J were expressed in tissue-specific patterns. Two types of mRNAs with and without an 18-base insert were detected for five MITF isoforms in canine tissues. MITF-M distal enhancer (MDE) was also located upstream from canine exon 1M.
Insights
Researchers identified three main canine Microphthalmia-associated transcription factor (MITF) isoforms, MITF-M, MITF-H, and MITF-A, with high homology to human counterparts. Canine MITF-E and MITF-J are also expressed, with MITF-M, MITF-E, and MITF-J showing tissue-specific expression patterns.
Area of Science:
- Molecular Biology
- Genetics
- Developmental Biology
Background:
- The Microphthalmia-associated transcription factor (MITF) is a crucial transcription factor in the basic helix-loop-helix leucine zipper (bHLH-LZ) family.
- MITF plays a vital role in the development and differentiation of melanocytes, mast cells, and osteoclasts.
Purpose of the Study:
- To investigate and characterize canine Microphthalmia-associated transcription factor (MITF) isoforms.
- To compare canine MITF isoforms with their human counterparts and determine their expression patterns in canine tissues.
Main Methods:
- cDNA cloning utilizing 5'-rapid amplification of cDNA ends (5'-RACE).
- Canine genome scanning to identify homologous regions to human MITF isoforms.
- Reverse transcription polymerase chain reaction (RT-PCR) to analyze mRNA expression.
Main Results:
- Three canine MITF isoforms (MITF-M, MITF-H, MITF-A) were identified, showing high nucleotide sequence homology to human isoforms (100%, 98%, 97% identity, respectively).
- Canine MITF-E and MITF-J isoforms were found to be expressed, while MITF-D was not detected via RT-PCR.
- Canine MITF-H and MITF-A mRNAs exhibited widespread expression, whereas MITF-M, MITF-E, and MITF-J displayed tissue-specific expression patterns. Two mRNA variants, with and without an 18-base insert, were detected for five canine MITF isoforms.
Conclusions:
- Canine MITF gene structure and isoform expression share significant similarities with humans.
- Specific canine MITF isoforms (MITF-M, MITF-E, MITF-J) are regulated in a tissue-specific manner, suggesting distinct functional roles in canine development and physiology.
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