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Updated: Jul 2, 2026

In-vitro Reconstitution of Bacterial Ubiquitination and VCP/p97-mediated Elimination
Published on: January 2, 2026
Impaired protein aggregate handling and clearance underlie the pathogenesis of p97/VCP-associated disease
Jeong-Sun Ju1, Sara E Miller, Phyllis I Hanson
1Department of Neurology, Washington University School of Medicine, St. Louis, Missouri 63110, USA.
Abstract:
Mutations in p97/VCP cause the multisystem disease inclusion body myopathy, Paget disease of the bone and frontotemporal dementia (IBMPFD). p97/VCP is a member of the AAA+ (ATPase associated with a variety of activities) protein family and has been implicated in multiple cellular processes. One pathologic feature in IBMPFD is ubiquitinated inclusions, suggesting that mutations in p97/VCP may affect protein degradation. The present study shows that IBMPFD mutant expression increases ubiquitinated proteins and susceptibility to proteasome inhibition. Co-expression of an aggregate prone protein such as expanded polyglutamine in IBMPFD mutant cells results in an increase in aggregated protein that localizes to small inclusions instead of a single perinuclear aggresome. These small inclusions fail to co-localize with autophagic machinery. IBMPFD mutants avidly bind to these small inclusions and may not allow them to traffic to an aggresome. This is rescued by HDAC6, a p97/VCP-binding protein that facilitates the autophagic degradation of protein aggregates. Expression of HDAC6 improves aggresome formation and protects IBMPFD mutant cells from polyglutamine-induced cell death. Our study emphasizes the importance of protein aggregate trafficking to inclusion bodies in degenerative diseases and the therapeutic benefit of inclusion body formation.
Insights
Mutations in p97/VCP cause IBMPFD, leading to protein aggregation and impaired degradation. HDAC6 can restore protein trafficking and protect cells from aggregate-induced death.
Area of Science:
- Molecular biology
- Cell biology
- Neuroscience
Background:
- Mutations in p97/VCP (valosin-containing protein) are linked to inclusion body myopathy, Paget disease of the bone, and frontotemporal dementia (IBMPFD).
- p97/VCP, an AAA+ ATPase, plays a role in protein degradation pathways, and IBMPFD is characterized by ubiquitinated inclusions.
- Dysfunctional protein degradation is a hallmark of IBMPFD, suggesting a link between p97/VCP mutations and cellular proteostasis disruption.
Purpose of the Study:
- To investigate the impact of IBMPFD-associated p97/VCP mutations on protein aggregation and degradation pathways.
- To explore the role of protein aggregate trafficking and the potential therapeutic benefit of HDAC6 in IBMPFD.
Main Methods:
- Utilized cell culture models expressing IBMPFD mutant p97/VCP.
- Co-expressed aggregate-prone proteins (expanded polyglutamine) to study inclusion body formation.
- Assessed protein ubiquitination, proteasome inhibition susceptibility, and aggresome localization.
- Investigated the interaction with HDAC6 and its effect on aggregate clearance and cell survival.
Main Results:
- IBMPFD mutant p97/VCP expression increased ubiquitinated proteins and sensitivity to proteasome inhibitors.
- Expanded polyglutamine proteins formed small inclusions that failed to co-localize with autophagic machinery in IBMPFD mutant cells.
- IBMPFD mutants interfered with the trafficking of these inclusions to aggresomes.
- HDAC6 expression rescued aggresome formation, promoted autophagic degradation of aggregates, and protected cells from polyglutamine-induced death.
Conclusions:
- p97/VCP mutations disrupt protein aggregate trafficking and degradation, contributing to IBMPFD pathogenesis.
- Targeting protein aggregate inclusion body formation and trafficking, potentially via HDAC6, offers a therapeutic strategy for IBMPFD and related proteinopathies.
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