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Updated: Jul 2, 2026

Mutagenesis and Functional Selection Protocols for Directed Evolution of Proteins in E. coli
Published on: March 16, 2011
Identification of virulence determinants in uropathogenic Proteus mirabilis using signature-tagged mutagenesis
Stephanie D Himpsl1, C Virginia Lockatell2, J Richard Hebel3
1Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Abstract:
The Gram-negative bacterium Proteus mirabilis causes urinary tract infections (UTIs) in individuals with long-term indwelling catheters or those with functional or structural abnormalities of the urinary tract. Known virulence factors include urease, haemolysin, fimbriae, flagella, DsbA, a phosphate transporter and genes involved in cell-wall synthesis and metabolism, many of which have been identified using the technique of signature-tagged mutagenesis (STM). To identify additional virulence determinants and to increase the theoretical coverage of the genome, this study generated and assessed 1880 P. mirabilis strain HI4320 mutants using this method. Mutants with disruptions in genes vital for colonization of the CBA mouse model of ascending UTI were identified after performing primary and secondary in vivo screens in approximately 315 CBA mice, primary and secondary in vitro screens in both Luria broth and minimal A medium to eliminate mutants with minor growth deficiencies, and co-challenge competition experiments in approximately 500 CBA mice. After completion of in vivo screening, a total of 217 transposon mutants were attenuated in the CBA mouse model of ascending UTI. Following in vitro screening, this number was reduced to 196 transposon mutants with a probable role in virulence. Co-challenge competition experiments confirmed significant attenuation for 37 of the 93 transposon mutants tested, being outcompeted by wild-type HI4320. Following sequence analysis of the 37 mutants, transposon insertions were identified in genes including the peptidyl-prolyl isomerases surA and ppiA, glycosyltransferase cpsF, biopolymer transport protein exbD, transcriptional regulator nhaR, one putative fimbrial protein, flagellar M-ring protein fliF and hook protein flgE, and multiple metabolic genes.
Insights
This study identified new virulence factors in Proteus mirabilis, a bacterium causing urinary tract infections (UTIs). Researchers screened over 1800 mutants to find genes essential for bacterial colonization and infection.
Area of Science:
- Microbiology
- Infectious Diseases
- Bacterial Pathogenesis
Background:
- Proteus mirabilis is a Gram-negative bacterium frequently associated with urinary tract infections (UTIs), particularly in catheterized individuals or those with urinary tract abnormalities.
- Previous studies identified several virulence factors, but a comprehensive understanding of P. mirabilis pathogenesis remains incomplete.
Purpose of the Study:
- To identify novel virulence determinants of Proteus mirabilis strain HI4320.
- To expand the genomic coverage for virulence gene discovery using signature-tagged mutagenesis.
Main Methods:
- Generated and screened 1880 P. mirabilis strain HI4320 mutants using signature-tagged mutagenesis (STM).
- Conducted extensive in vivo (CBA mouse model of ascending UTI) and in vitro (growth media) screens to identify attenuated mutants.
- Performed co-challenge competition experiments to confirm virulence attenuation in vivo.
Main Results:
- Identified 217 transposon mutants attenuated in the mouse UTI model after in vivo screening.
- Reduced the list to 196 mutants with a probable role in virulence after in vitro screening.
- Confirmed significant attenuation for 37 mutants outcompeted by wild-type P. mirabilis, with insertions in genes like surA, ppiA, cpsF, exbD, nhaR, and flagellar/fimbrial genes.
Conclusions:
- This study significantly expanded the repertoire of known P. mirabilis virulence factors.
- Identified novel genes, including those involved in protein isomerization, cell wall synthesis, transport, and motility, contributing to P. mirabilis pathogenesis.
- Provides a foundation for further research into P. mirabilis virulence mechanisms and potential therapeutic targets.
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