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Updated: Jul 2, 2026

Co-immunoprecipitation Assay for Studying Functional Interactions Between Receptors and Enzymes
Published on: September 28, 2018
Interactions between the Fyn SH3-domain and adaptor protein Cbp/PAG derived ligands, effects on kinase activity and
Silje A Solheim1, Evangelia Petsalaki, Anne J Stokka
1The Biotechnology Centre of Oslo, University of Oslo, Norway.
Abstract:
Csk-binding protein/phosphoprotein associated with glycosphingolipid-enriched domains is a transmembrane adaptor protein primarily involved in negative regulation of T-cell activation by recruitment of C-terminal Src kinase (Csk), a protein tyrosine kinase which represses Src kinase activity through C-terminal phosphorylation. Recruitment of Csk occurs via SH2-domain binding to PAG pTyr317, thus, the interaction is highly dependent on phosphorylation performed by the Src family kinase Fyn, which docks onto PAG using a dual-domain binding mode involving both SH3- and SH2-domains of Fyn. In this study, we investigated Fyn SH3-domain binding to 14-mer peptide ligands derived from Cbp/PAG-enriched microdomains sequence using biochemical, biophysical and computational techniques. Interaction kinetics and dissociation constants for the various ligands were determined by SPR. The local structural impact of ligand association has been evaluated using CD, and molecular modelling has been employed to investigate details of the interactions. We show that data from these investigations correlate with functional effects of ligand binding, assessed experimentally by kinase assays using full-length PAG proteins as substrates. The presented data demonstrate a potential method for modulation of Src family kinase tyrosine phosphorylation through minor changes of the substrate SH3-interacting motif.
Insights
Phosphoprotein associated with glycosphingolipid-enriched domains (PAG) regulates T-cell activation by recruiting C-terminal Src kinase (Csk). This study reveals how Fyn kinase binding to PAG can be modulated, offering a new way to control Src family kinase activity.
Area of Science:
- Immunology
- Molecular Biology
- Biochemistry
Background:
- Csk-binding protein/phosphoprotein associated with glycosphingolipid-enriched domains (PAG) is a transmembrane adaptor protein crucial for T-cell activation regulation.
- PAG recruits C-terminal Src kinase (Csk) to inhibit Src kinase activity via phosphorylation.
- The Src family kinase Fyn binds to PAG through a dual-domain interaction, involving its SH3 and SH2 domains, which is critical for Csk recruitment.
Purpose of the Study:
- To investigate the binding mechanism of the Fyn SH3 domain to peptide ligands derived from PAG microdomain sequences.
- To characterize the kinetics and thermodynamics of Fyn SH3-domain/ligand interactions.
- To explore the structural basis of Fyn SH3-domain binding to PAG and its functional implications.
Main Methods:
- Surface Plasmon Resonance (SPR) for determining interaction kinetics and dissociation constants.
- Circular Dichroism (CD) spectroscopy to assess the local structural changes upon ligand binding.
- Molecular modeling to elucidate the detailed interaction mechanisms.
- Kinase assays using full-length PAG proteins to evaluate functional effects.
Main Results:
- Characterization of Fyn SH3-domain binding kinetics and affinity to various 14-mer peptide ligands.
- Identification of structural changes induced by ligand association using CD spectroscopy.
- Molecular modeling provided insights into the Fyn SH3-domain/peptide interactions.
- Demonstrated correlation between ligand binding data and functional effects on PAG phosphorylation.
Conclusions:
- The Fyn SH3-domain interaction with PAG-derived peptides is quantifiable and structurally influenced.
- Minor modifications in the SH3-interacting motif of PAG can modulate Src family kinase tyrosine phosphorylation.
- This study presents a potential strategy for controlling Src family kinase activity through substrate-based modulation.
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