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Basicity of Heterocyclic Aromatic Amines01:25

Basicity of Heterocyclic Aromatic Amines

Heterocyclic amines, where the N atom is a part of an alicyclic system, are similar in basicity to alkylamines. Interestingly, the heterocyclic amine having a nitrogen atom as part of an aromatic ring has much less basicity than its corresponding alicyclic counterpart. For this reason, as presented in Figure 1, piperidine (pKb = 2.8) is significantly more basic than pyridine (pKb = 8.8).
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Amines can behave as Brønsted–Lowry bases by accepting a proton from the acid to form corresponding conjugate acids. Due to a lone pair of nonbonding electrons, aliphatic amines can also act as Lewis bases by forming a covalent bond with an electrophile.
To measure the basicity of amines, two conventions are generally used. The first defines Kb as the basicity constant for the deprotonation reaction of water by the amine, as presented in Figure 1. Conventionally, lower Kb indicates higher...
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Amino acids03:42

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Amino acids are the monomers that comprise proteins. Each amino acid has the same fundamental structure, which consists of a central carbon atom, or the alpha (α) carbon, bonded to an amino group (NH2), a carboxyl group (COOH), and to a hydrogen atom. Every amino acid also has another atom or group of atoms bonded to the central atom known as the R group. There are 20 common amino acids present in proteins, each with a different R group. Variation in the amino acid sequence is responsible for...
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Exploring the Arginine Methylome by Nuclear Magnetic Resonance Spectroscopy
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Published on: December 16, 2021

Structure-based analysis reveals hydration changes induced by arginine hydrochloride.

Makoto Nakakido1, Yoshikazu Tanaka, Mariko Mitsuhori

  • 1Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa 277-8562, Japan.

Biophysical Chemistry
|August 30, 2008
PubMed
Summary

This study investigated how arginine hydrochloride affects protein structure and hydration. Using X-ray crystallography, the researchers found that the compound does not alter the protein's backbone or side chains. However, the number of hydration water molecules changed with the concentration of arginine hydrochloride. The authors suggest that these hydration changes may suppress protein aggregation. No stable binding of arginine molecules was observed. The findings support a non-covalent mechanism for aggregation suppression. This could help improve protein refolding and stabilization strategies.

Keywords:
protein stabilizationhydration changesX-ray crystallographyarginine effects

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Area of Science:

  • Protein chemistry
  • Structural biology
  • Biophysical chemistry

Background:

Protein aggregation is a major concern in biotechnology and pharmaceutical development. Stabilizing agents such as arginine hydrochloride are frequently used to mitigate this issue. Previous studies have shown that certain amino acid salts can influence protein folding and hydration. However, the exact mechanism by which arginine hydrochloride prevents aggregation remains unclear. No prior work had resolved how hydration changes specifically affect protein stability in these conditions. This uncertainty motivated researchers to investigate the structural and hydration effects of arginine hydrochloride on proteins. The absence of detailed structural insights into these interactions has limited the development of more effective stabilization strategies. This gap in understanding is particularly relevant in the context of protein refolding and formulation. The need for a clearer picture of hydration dynamics in the presence of arginine hydrochloride is evident.

Purpose Of The Study:

This study aimed to determine how arginine hydrochloride affects protein hydration and aggregation. The researchers focused on hen egg-white lysozyme as a model protein. They used X-ray crystallography to examine structural changes in the protein and surrounding solvent molecules. The goal was to assess whether arginine hydrochloride alters the protein backbone or side chains. They also wanted to determine if arginine molecules bind stably to the protein. Another objective was to quantify hydration water molecules at different concentrations of arginine hydrochloride. Understanding these effects could help clarify the mechanism of aggregation suppression. The findings may guide the use of arginine hydrochloride in protein refolding and formulation.

Main Methods:

The team employed X-ray crystallography to analyze hen egg-white lysozyme in arginine hydrochloride solutions. They prepared crystals at varying concentrations of the compound. Structural data were collected to determine backbone and side-chain conformations. Solvent molecules were also examined for interactions with the protein. The researchers used crystallographic techniques to track hydration water molecules. No stably bound arginine molecules were detected in the crystal structures. The study focused on hydration changes rather than covalent modifications. The experimental approach allowed for precise quantification of water molecule numbers.

Main Results:

The backbone and side-chain structures of hen egg-white lysozyme remained unchanged in arginine hydrochloride solutions. No stable binding of arginine molecules to the protein was observed. The number of hydration water molecules varied with the concentration of arginine hydrochloride. This suggests a concentration-dependent effect on hydration structure. The protein’s overall conformation was not affected by the presence of the compound. However, transient interactions may have occurred. The results indicate that hydration changes are central to the observed effects. The study provides evidence for a non-covalent mechanism of aggregation suppression.

Conclusions:

The findings suggest that arginine hydrochloride suppresses protein aggregation through hydration changes. The protein structure remained unaffected by the compound. The number of hydration water molecules changed with concentration. Transient interactions between arginine and the protein may play a role. No stable binding of arginine molecules was observed. The results support a mechanism based on hydration structure modification. This aligns with the authors’ hypothesis about transient effects. The study contributes to understanding how arginine hydrochloride functions in protein stabilization.

The authors suggest that arginine hydrochloride alters the hydration structure around proteins. This change may reduce aggregation by modifying transient interactions.

X-ray crystallography was used to examine hen egg-white lysozyme in arginine hydrochloride solutions. This allowed analysis of hydration and structural changes.

No stably bound arginine molecules were observed in the crystal structures. The interaction appears to be transient.

The number of hydration water molecules changed with arginine hydrochloride concentration. This suggests hydration structure is a key factor in the observed effects.

The backbone and side-chain structures of the protein remained unchanged. No significant structural alterations were observed.

The results support a mechanism where hydration changes suppress aggregation. This could guide the use of arginine hydrochloride in protein refolding and formulation.