Staphylococcal cassette chromosome mec (SCCmec) characterization and panton-valentine leukocidin gene occurrence for methicillin-resistant Staphylococcus aureus in Turkey, from 2003 to 2006
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Updated: Jul 2, 2026

Multiplex PCR Assay for Typing of Staphylococcal Cassette Chromosome Mec Types I to V in Methicillin-resistant Staphylococcus aureus
Published on: September 5, 2013
Abdullah Kilic1, Aylin Uskudar Guclu, Zeynep Senses
1Department of Microbiology and Clinical Microbiology, Gulhane Military Medical Academy and School of Medicine, 06018, Etlik, Ankara, Turkey. abkilic@gata.edu.tr
Abstract:
Methicillin-resistant Staphylococcus aureus (MRSA) cause serious community-acquired and nosocomial diseases all over the world. We determined the SCCmec types and occurrence of the PVL gene by using TaqMan real-time PCR method, and correlated these with phenotypic antibiotic susceptibility patterns for MRSA strains collected from Gulhane Military Medical Academy Hospital (GMMAH) during 4 years study period. To our knowledge, this is the first report from Turkey of molecular SCCmec typing analysis of MRSA stains. A total of 385 clinical MRSA isolates collected in the clinical and Microbiology Laboratory at GMMAH between 2003 and 2006 were included in the study. Overall, SCCmec types-I, II, III, IV, V, nontypeable and PVL occurrence were detected in 11 (2.8%), 3 (0.8%), 316 (82.1%), 20 (5.1%), 20 (5.1%), 15 (3.9%) and 5 (1.3%) isolates, respectively. A total of 330 (85.5%) were SCCmec-I/II/III and 40 (10.3%) were SCCmec IV/V. SCCmec-I/II/III isolates were recovered more from patients with serious infections in surgical departments especially those with intensive care units than the SCCmec-IV/V isolates (chi(2) = 13.560, P < 0.001). SCCmec-I/II/III MRSA strains were predominantly recovered from blood stream (53.0%, P = 0.014), while SCCmec-IV/V strains were predominately isolated from skin and soft tissue and abscess (55.0%, P < 0.001). The PVL gene was detected in 10.0% of SCCmec-IV/V isolates in contrast to 0.3% in SCCmec-I/II/III (chi(2) = 25.164, P < 0.001). SCCmec-I/II/III MRSA strains were more resistant to clindamycin (chi(2) = 5.078, P = 0.024), amoxicillin-clavulanate (chi(2) = 84.912, P < 0.001), erythromycin (chi(2) = 4.651, P = 0.031), gentamicin (chi(2) = 24.869, P < 0.001), and rifampin (chi(2) = 18.878, P < 0.001) than SCCmec-IV/V MRSA strains. This data indicates that SCCmec-III MRSA strains that do not carry the PVL gene are the predominant MRSA strains in our hospital setting in Ankara, capital of Turkey and that SCCmec-I/II/III MRSA strains may cause serious infections in surgical departments especially those with intensive care units.
Insights
Methicillin-resistant Staphylococcus aureus (MRSA) strains, particularly SCCmec-III, are prevalent in Turkey and associated with severe hospital infections. These strains show distinct genetic profiles and antibiotic resistance patterns compared to other MRSA types.
Area of Science:
- Microbiology
- Infectious Diseases
- Molecular Epidemiology
Background:
- Methicillin-resistant Staphylococcus aureus (MRSA) poses a global health threat, causing severe community-acquired and nosocomial infections.
- Understanding the molecular epidemiology of MRSA, including SCCmec types and virulence factors like the PVL gene, is crucial for effective treatment and control.
Purpose of the Study:
- To determine the distribution of SCCmec types and the prevalence of the Panton-Valentine Leukocidin (PVL) gene in MRSA isolates from a Turkish hospital.
- To correlate these molecular findings with phenotypic antibiotic susceptibility patterns.
- To provide the first molecular SCCmec typing analysis of MRSA strains in Turkey.
Main Methods:
- TaqMan real-time PCR was employed to identify SCCmec types and detect the PVL gene.
- Phenotypic antibiotic susceptibility testing was performed on 385 clinical MRSA isolates collected between 2003 and 2006.
- Statistical analysis (chi-squared test) was used to correlate molecular types with infection sites and antibiotic resistance.
Main Results:
- SCCmec type III was the predominant type (82.1%), followed by types IV and V (10.3%).
- SCCmec-I/II/III MRSA strains were more frequently isolated from serious infections in surgical and intensive care units, and bloodstream infections.
- SCCmec-IV/V strains were more often associated with skin and soft tissue infections, and carried the PVL gene more frequently (10.0%) than SCCmec-I/II/III strains (0.3%).
- SCCmec-I/II/III MRSA strains exhibited higher resistance to clindamycin, amoxicillin-clavulanate, erythromycin, gentamicin, and rifampin.
Conclusions:
- SCCmec-III MRSA strains lacking the PVL gene are the dominant MRSA type in the studied Turkish hospital.
- SCCmec-I/II/III MRSA strains are associated with severe infections in critical care settings.
- The findings highlight the importance of molecular typing for understanding MRSA epidemiology and guiding clinical management in Turkey.
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