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Related Concept Videos

Ion Channels01:19

Ion Channels

The movement of ions like sodium, potassium, and calcium into and out of the cell is essential to maintain the electrochemical gradient in living cells. The ion channels—a class of membrane transport proteins—help maintain this ionic gradient for the smooth functioning of physiological activities such as maintaining cell size and volume, conducting nerve impulses, and gas and nutrient exchange.
Ion channels are specialized integral membrane proteins on the plasma membrane that allow specific...
Cell Specific Gene Expression01:58

Cell Specific Gene Expression

Multicellular organisms contain a variety of structurally and functionally distinct cell types, but the DNA in all the cells originated from the same parent cells. The differences in the cells can be attributed to the differential gene expression. Liver cells, whose functions include detoxification of blood, production of bile to metabolize fats, and synthesis of proteins essential for metabolism, must express a specific set of genes to perform their functions. Gene expression also varies with...
Cell Specific Gene Expression01:58

Cell Specific Gene Expression

Multicellular organisms contain a variety of structurally and functionally distinct cell types, but the DNA in all the cells originated from the same parent cells. The differences in the cells can be attributed to the differential gene expression. Liver cells, whose functions include detoxification of blood, production of bile to metabolize fats, and synthesis of proteins essential for metabolism, must express a specific set of genes to perform their functions. Gene expression also varies with...
Non-gated Ion Channels01:24

Non-gated Ion Channels

Ion channels are specialized proteins on the plasma membrane that allow charged ions to pass down their electrochemical gradient. Their main function is to maintain the membrane potential which is critical for cell viability. These channels are either gated or non-gated and can transport more than a thousand ions within milliseconds for the cellular event to occur.
Compared to the gated ion channels, the non-gated channels, also known as leakage or passive channels, have no gating mechanism.
Non-gated Ion Channels01:24

Non-gated Ion Channels

Ion channels are specialized proteins on the plasma membrane that allow charged ions to pass down their electrochemical gradient. Their main function is to maintain the membrane potential which is critical for cell viability. These channels are either gated or non-gated and can transport more than a thousand ions within milliseconds for the cellular event to occur.
Compared to the gated ion channels, the non-gated channels, also known as leakage or passive channels, have no gating mechanism.
G-Protein Gated Ion Channels01:21

G-Protein Gated Ion Channels

GPCRs are primarily responsible for our sense of smell, taste, and vision.  The binding of a sensory stimulus activates GPCR to stimulate effector proteins, many of which are ion channels in the sensory organs. GPCRs modulate the opening and closing of the target ion channels either directly by binding them, or by releasing second messengers that activate these channels. As ions move across the membrane, the membrane potential is altered, which induces an appropriate response.
Sensory organs,...

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Related Experiment Video

Updated: Jul 1, 2026

Recapitulation of an Ion Channel IV Curve Using Frequency Components
10:14

Recapitulation of an Ion Channel IV Curve Using Frequency Components

Published on: February 8, 2011

[Association between ion channel subtype and its gene co-expression].

De-Wu Yang1, Xia Li, Xue Xiao

  • 1Department of Biological Engineering, Capital Medical University, Beijing 100069, China. yt2610@163.com

Yi Chuan = Hereditas
|September 10, 2008
PubMed
Summary

This study reveals that ion channel genes of the same functional subtype are co-expressed at the mRNA level. Standardized gene expression data and clustering methods identified distinct functional subtypes for ion channels in humans and mice.

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Related Experiment Videos

Last Updated: Jul 1, 2026

Recapitulation of an Ion Channel IV Curve Using Frequency Components
10:14

Recapitulation of an Ion Channel IV Curve Using Frequency Components

Published on: February 8, 2011

Determination of the Relative Cell Surface and Total Expression of Recombinant Ion Channels Using Flow Cytometry
11:32

Determination of the Relative Cell Surface and Total Expression of Recombinant Ion Channels Using Flow Cytometry

Published on: September 28, 2016

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
07:15

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation

Published on: January 16, 2019

Area of Science:

  • Genomics
  • Bioinformatics
  • Molecular Biology

Context:

  • Understanding ion channel gene expression is crucial for disease mechanisms and functional annotation.
  • Gene expression profiles provide insights into cellular functions and disease pathways.

Purpose:

  • To analyze and classify ion channel genes based on their expression patterns.
  • To identify associations between gene expression and ion channel functional subtypes.

Summary:

  • Standardized human and mouse gene expression data were analyzed using Principle Component Analysis (PCA) and fuzzy C-mean clustering.
  • This approach reduced dimensionality while preserving key information, enabling the classification of ion channel genes into four functional subtypes.
  • Statistical significance tests, including random sampling and Kappa tests, confirmed the high consistency between clustered genes and known functional subtypes.

Impact:

  • The findings demonstrate a tendency for co-expression of ion channel genes within the same functional subtype at the mRNA level.
  • This research aids in annotating unknown ion channel functions and understanding the molecular basis of ion channel-related diseases.
  • The methodology provides a robust framework for analyzing gene expression data to uncover functional relationships in other gene families.