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Updated: Jul 1, 2026

Whole Genome Sequencing of Candida glabrata for Detection of Markers of Antifungal Drug Resistance
Published on: December 28, 2017
Caspofungin-resistant Candida tropicalis strains causing breakthrough fungemia in patients at high risk for
Guillermo Garcia-Effron1, Dimitrios P Kontoyiannis, Russell E Lewis
1Public Health Research Institute, New Jersey Medical School, University of Medicine and Dentistry of New Jersey, Newark, New Jersey , USA.
Abstract:
We identified three cases of C. tropicalis strains causing breakthrough fungemia in allogeneic stem cell recipients receiving caspofungin prophylaxis and treatment. Three genetically unrelated isolates with high echinocandin MICs were identified. Each strain carried a characteristic mutation conferring an amino acid substitution within Fks1p hot spot 1.
Insights
Candida tropicalis caused breakthrough fungemia in stem cell transplant patients despite caspofungin treatment. Mutations in the Fks1 gene were found in these resistant strains.
Area of Science:
- Mycology
- Infectious Diseases
- Hematology
Background:
- Allogeneic stem cell transplantation (SCT) recipients are at high risk for invasive fungal infections.
- Echinocandins, such as caspofungin, are commonly used for prophylaxis and treatment of invasive candidiasis.
- Candida tropicalis is an opportunistic fungal pathogen that can cause severe infections in immunocompromised individuals.
Observation:
- Three cases of breakthrough fungemia caused by Candida tropicalis were observed in allogeneic SCT recipients.
- These patients were receiving caspofungin for prophylaxis and/or treatment.
- The C. tropicalis isolates exhibited high minimum inhibitory concentrations (MICs) to echinocandins.
Findings:
- Genetically distinct isolates of C. tropicalis were identified.
- All identified strains possessed a specific mutation in the Fks1 gene.
- This mutation resulted in an amino acid substitution within the Fks1p hot spot 1 region, conferring echinocandin resistance.
Implications:
- The emergence of echinocandin-resistant Candida tropicalis poses a significant challenge in managing invasive fungal infections in vulnerable patient populations.
- Genetic mutations in Fks1p are a key mechanism of caspofungin resistance in C. tropicalis.
- This highlights the need for vigilant monitoring of antifungal resistance patterns and consideration of alternative treatment strategies in SCT recipients.
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