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Published on: August 29, 2018
Discovery of porcine microRNAs and profiling from skeletal muscle tissues during development
Ting-Hua Huang1, Meng-Jin Zhu, Xin-Yun Li
1Key Laboratory of Agricultural Animal Genetics, Breeding, and Reproduction of Ministry of Education & Key Laboratory of Swine Genetics, Huazhong Agricultural University, Wuhan, People's Republic of China.
Abstract:
MiRNAs (microRNAs) play critical roles in many important biological processes such as growth and development in mammals. In this study, we identified hundreds of porcine miRNA candidates through in silico prediction and analyzed their expression in developing skeletal muscle using microarray. Microarray screening using RNA samples prepared from a 33-day whole embryo and an extra embryo membrane validated 296 of the predicted candidates. Comparative expression profiling across samples of longissimus muscle collected from 33-day and 65-day post-gestation fetuses, as well as adult pigs, identified 140 differentially expressed miRNAs amongst the age groups investigated. The differentially expressed miRNAs showed seven distinctive types of expression patterns, suggesting possible involvement in certain biological processes. Five of the differentially expressed miRNAs were validated using real-time PCR. In silico analysis of the miRNA-mRNA interaction sites suggested that the potential mRNA targets of the differentially expressed miRNAs may play important roles in muscle growth and development.
Insights
This study identified 296 porcine microRNAs (miRNAs) and found 140 were differentially expressed in developing skeletal muscle. These findings suggest miRNAs are crucial for pig muscle growth and development.
Area of Science:
- Animal Science
- Molecular Biology
- Genetics
Background:
- MicroRNAs (miRNAs) are vital regulators of mammalian growth and development.
- Understanding miRNA roles in livestock is crucial for agricultural applications.
Purpose of the Study:
- To identify and characterize porcine microRNAs (miRNAs) involved in skeletal muscle development.
- To analyze the expression patterns of these miRNAs across different developmental stages in pigs.
Main Methods:
- In silico prediction of porcine miRNA candidates.
- Microarray analysis to validate predicted miRNAs and profile their expression in developing skeletal muscle.
- Real-time PCR validation of selected differentially expressed miRNAs.
Main Results:
- Hundreds of porcine miRNA candidates were predicted, with 296 validated.
- 140 differentially expressed miRNAs were identified in longissimus muscle from fetuses and adult pigs.
- Seven distinct expression patterns were observed, indicating specific biological roles.
Conclusions:
- A significant number of porcine miRNAs are differentially expressed during skeletal muscle development.
- These miRNAs likely play critical roles in regulating muscle growth and development in pigs.
- Further research into miRNA-mRNA interactions can elucidate specific regulatory pathways.
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