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Published on: November 20, 2015
Preterm birth in Caucasians is associated with coagulation and inflammation pathway gene variants
Digna R Velez1, Stephen J Fortunato, Poul Thorsen
1Center for Human Genetics Research, Vanderbilt University, Nashville, TN, USA.
Insights
Genetic factors in spontaneous preterm birth (PTB) were investigated. Maternal genes in complement-coagulation pathways and fetal genes in inflammatory pathways showed significant associations with PTB risk.
Area of Science:
- Genetics
- Reproductive Biology
- Neonatal Health
Background:
- Spontaneous preterm birth (PTB) affects 12% of US pregnancies, leading to significant neonatal morbidity and mortality.
- PTB is a complex condition with multiple potential causes and pathophysiological pathways.
- Identifying genetic risk factors is crucial for understanding and preventing PTB.
Purpose of the Study:
- To investigate genetic risk factors for spontaneous preterm birth (PTB) using a candidate gene association study.
- To examine both maternal and fetal DNA for associations with PTB.
- To explore potential interactions between genes in different pathways.
Main Methods:
- A high-throughput candidate gene association study examined 1536 SNPs in 130 genes.
- Maternal and fetal DNA from 370 US Caucasian birth events (172 cases, 198 controls) were analyzed.
- Analyses included single locus, haplotype, and multi-locus association tests for both maternal and fetal data.
Main Results:
- Maternal DNA showed the strongest associations in the complement-coagulation pathway, notably in Factor V (FV), Factor VII (FVII), and tissue plasminogen activator (tPA) genes.
- A significant association was found for tPA marker rs879293 (p = 2.0x10(-6)) and a 4-marker tPA haplotype (p = 6.00x10(-3)).
- Fetal DNA showed the strongest association in the inflammatory pathway at rs17121510 in the interleukin-10 receptor antagonist (IL-10RA) gene (p = 3.34x10(-4)).
- Exploratory analysis suggested a potential interaction between FV and FVII markers in the complement and coagulation pathway (p<0.001).
Conclusions:
- Genetic factors in both coagulation and inflammation pathways play a role in spontaneous preterm birth.
- Distinct maternal and fetal genetic risks for PTB may exist.
- Further research into these genetic pathways could lead to improved PTB prediction and prevention strategies.
Abstract:
Spontaneous preterm birth (<37 weeks gestation-PTB) occurs in approximately 12% of pregnancies in the United States, and is the largest contributor to neonatal morbidity and mortality. PTB is a complex disease, potentially induced by several etiologic factors from multiple pathophysiologic pathways. To dissect the genetic risk factors of PTB a large-scale high-throughput candidate gene association study was performed examining 1536 SNP in 130 candidate genes from hypothesized PTB pathways. Maternal and fetal DNA from 370 US Caucasian birth-events (172 cases and 198 controls) was examined. Single locus, haplotype, and multi-locus association analyses were performed separately on maternal and fetal data. For maternal data the strongest associations were found in genes in the complement-coagulation pathway related to decidual hemorrhage in PTB. In this pathway 3 of 6 genes examined had SNPs significantly associated with PTB. These include factor V (FV) that was previously associated with PTB, factor VII (FVII), and tissue plasminogen activator (tPA). The single strongest effect was observed in tPA marker rs879293 with a significant allelic (p = 2.30x10(-3)) and genotypic association (p = 2.0x10(-6)) with PTB. The odds ratio (OR) for this SNP was 2.80 [CI 1.77-4.44] for a recessive model. Given that 6 of 8 markers in tPA were statistically significant, sliding window haplotype analyses were performed and revealed an associating 4 marker haplotype in tPA (p = 6.00x10(-3)). The single strongest effect in fetal DNA was observed in the inflammatory pathway at rs17121510 in the interleukin-10 receptor antagonist (IL-10RA) gene for allele (p = 0.01) and genotype (p = 3.34x10(-4)). The OR for the IL-10RA genotypic additive model was 1.92 [CI 1.15-3.19] (p = 2.00x10(-3)). Finally, exploratory multi-locus analyses in the complement and coagulation pathway were performed and revealed a potentially significant interaction between a marker in FV (rs2187952) and FVII (rs3211719) (p<0.001). These results support a role for genes in both the coagulation and inflammation pathways, and potentially different maternal and fetal genetic risks for PTB.
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