Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Methods to Assess Microbial Communities01:19

Methods to Assess Microbial Communities

Microbial communities, comprising bacteria, archaea, and eukaryotic microorganisms, inhabit diverse ecosystems and play crucial roles in environmental and biological processes. Their diversity is defined by three main parameters: species richness (the number of distinct species), species abundance (the relative quantity of each species), and species evenness (how uniformly individual species are distributed in various locations). These factors together shape the structure and ecological balance...
Microbial Mats01:25

Microbial Mats

Microbial communities forming biofilms and mats represent complex, spatially structured ecosystems where metabolic processes are stratified according to light, oxygen, and nutrient gradients. Biofilms are initial colonization stages, only a few millimeters thick, while mature microbial mats can reach centimeter-scale thickness and display intricate vertical organization. Their structural and functional heterogeneity allows microorganisms to occupy distinct ecological niches within a few...
Microenvironments01:22

Microenvironments

Microorganisms inhabit highly localized spaces known as microenvironments, which are defined by distinct physical and chemical characteristics. These include oxygen concentration, pH, temperature, light availability, and nutrient levels. The conditions within a microenvironment can differ markedly from those in the surrounding area and significantly influence microbial growth, metabolism, and community structure.Microenvironments often display sharp physicochemical gradients over small spatial...
Introduction to Microbial Ecology01:28

Introduction to Microbial Ecology

Microbial ecology examines the complex web of interactions and diversity among microorganisms within various ecosystems. This field seeks to understand how microbial populations adapt to and influence their environments and how these interactions shape broader ecological processes. Microbes are integral to ecosystem function, participating in nutrient cycling, energy flow, and the maintenance of environmental homeostasis.An ecosystem represents a dynamic interaction between living organisms...
Marine Microbial Ecology01:30

Marine Microbial Ecology

Marine microbial ecosystems are shaped by distinct physicochemical limits, including high salinity, low nutrient availability, and fluctuating oxygen levels. These conditions favor smaller microbial cell sizes, which maximize their surface-to-volume ratio for efficient nutrient uptake.Microbial activity and community composition are closely linked to biogeochemical cycles, particularly in dynamic environments like estuaries, where halotolerant microbes thrive in response to variable salinity...
Methods to Assess Microbial Populations01:30

Methods to Assess Microbial Populations

Assessing microbial populations is crucial for understanding microbial roles in health, ecology, and industry. Various complementary techniques—both culture-based and molecular—enable detailed analysis of microbial abundance, diversity, and function.Viable Plate CountThe viable plate count is a traditional culture-based method used to estimate the number of living microbes in a sample. After serial dilution, the sample is spread onto nutrient agar plates. Each viable cell forms a visible...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Global long-term agricultural experiments reveal consequences of mineral fertilization for soil microbiomes.

Nature communications·2026
Same author

Detecting apple replant disease in the field - deciphering reasons for local growth depression.

PloS one·2026
Same author

Soil depths and microhabitats shape soil and root-associated bacterial and archaeal communities more than crop rotation in wheat.

Frontiers in microbiomes·2026
Same author

Bacillus seed coating mitigates early growth reduction in successive winter wheat without altering rhizosphere bacterial and archaeal communities.

BMC plant biology·2026
Same author

Biogeography influences plant-microbe interactions and natural soil suppressiveness to black root rot disease of tobacco.

Genome biology·2025
Same author

Novel insights into the genome organization of <i>Rhizobiaceae</i>: identification of linear plasmids.

Microbial genomics·2025
Same journal

Host-selective PMA-PCR enhances bacterial diversity recovery and lowers detection limits in plant microbiome profiling.

FEMS microbiology ecology·2026
Same journal

Versatile microbial community responsible for nitrate turnover in a carbonate aquifer in southwest Germany.

FEMS microbiology ecology·2026
Same journal

Geochemistry shapes microbial diversity and selected functional traits in flowback and produced waters from hydraulically fractured formations.

FEMS microbiology ecology·2026
Same journal

Desiccation, but not shading, substantially shifts the microbial community composition of benthic microbial mats in meltwater ponds near Bratina Island, Antarctica.

FEMS microbiology ecology·2026
Same journal

Soil microbial ecology and microbiome-metabolite linkages improve understanding of ecosystem states along terrestrial-aquatic interfaces.

FEMS microbiology ecology·2026
Same journal

Electrogenic CH4 oxidation on a bioanode: putative extracellular electron transport system in Methylobacter sp.

FEMS microbiology ecology·2026
See all related articles

Related Experiment Video

Updated: Jun 29, 2026

Assembly and Tracking of Microbial Community Development within a Microwell Array Platform
09:24

Assembly and Tracking of Microbial Community Development within a Microwell Array Platform

Published on: June 6, 2017

Microbial community networks

Kornelia Smalla, Christoph C Tebbe, Jan Dirk van Elsas

    FEMS Microbiology Ecology
    |October 2, 2008
    PubMed
    Summary

    No abstract available in PubMed .

    More Related Videos

    Characterizing Microbiome Dynamics &#8211; Flow Cytometry Based Workflows from Pure Cultures to Natural Communities
    09:57

    Characterizing Microbiome Dynamics – Flow Cytometry Based Workflows from Pure Cultures to Natural Communities

    Published on: July 12, 2018

    Divergence of Root Microbiota in Different Habitats based on Weighted Correlation Networks
    09:49

    Divergence of Root Microbiota in Different Habitats based on Weighted Correlation Networks

    Published on: September 25, 2021

    Related Experiment Videos

    Last Updated: Jun 29, 2026

    Assembly and Tracking of Microbial Community Development within a Microwell Array Platform
    09:24

    Assembly and Tracking of Microbial Community Development within a Microwell Array Platform

    Published on: June 6, 2017

    Characterizing Microbiome Dynamics &#8211; Flow Cytometry Based Workflows from Pure Cultures to Natural Communities
    09:57

    Characterizing Microbiome Dynamics – Flow Cytometry Based Workflows from Pure Cultures to Natural Communities

    Published on: July 12, 2018

    Divergence of Root Microbiota in Different Habitats based on Weighted Correlation Networks
    09:49

    Divergence of Root Microbiota in Different Habitats based on Weighted Correlation Networks

    Published on: September 25, 2021