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Updated: Jun 29, 2026

Studying Microbial Communities In Vivo: A Model of Host-mediated Interaction Between Candida Albicans and Pseudomonas Aeruginosa in the Airways
Published on: January 13, 2016
Microbial interactions during upper respiratory tract infections
Melinda M Pettigrew1, Janneane F Gent, Krystal Revai
1Yale School of Public Health, New Haven, Connecticut 06520-8034, USA. melinda.pettigrew@yale.edu
Insights
Bacterial colonization in children
Area of Science:
- Microbiology
- Pediatrics
- Infectious Diseases
Background:
- Nasopharyngeal colonization by Streptococcus pneumoniae, Haemophilus influenzae, Moraxella catarrhalis, and Staphylococcus aureus is common.
- Children are vulnerable to bacterial infections, especially following upper respiratory tract infections (URIs).
Purpose of the Study:
- To investigate the colonization patterns of four key nasopharyngeal bacteria in healthy children during URIs.
- To analyze the interactions between these bacterial species during colonization.
Main Methods:
- Prospective cohort study of 212 healthy children aged 6-36 months.
- Year-long follow-up with analysis of 968 nasopharyngeal swabs.
Main Results:
- Streptococcus pneumoniae colonization showed a negative association with Haemophilus influenzae colonization.
- When Haemophilus influenzae and Moraxella catarrhalis co-colonized, the likelihood of all three species (including S. pneumoniae) increased.
- Negative associations were observed between S. pneumoniae and S. aureus, and between H. influenzae and S. aureus.
Conclusions:
- Polymicrobial nasopharyngeal colonization dynamics are complex and depend on the specific bacterial species and their combinations.
- Interventions like antimicrobial therapy or vaccination may have unintended consequences on the nasopharyngeal microbiome.
Abstract:
Streptococcus pneumoniae, Haemophilus influenzae, Moraxella catarrhalis, and Staphylococcus aureus often colonize the nasopharynx. Children are susceptible to bacterial infections during or soon after upper respiratory tract infection (URI). We describe colonization with these 4 bacteria species alone or in combination during URI. Data were from a prospective cohort of healthy children 6 to 36 months of age followed up for 1 year. Analyses of 968 swabs from 212 children indicated that S. pneumoniae colonization is negatively associated with colonization by H. influenzae. Competitive interactions shifted when H. influenzae and M. catarrhalis colonized together. In this situation, the likelihood of colonization with all 3 species is higher. Negative associations were identified between S. pneumoniae and S. aureus and between H. influenzae and S. aureus. Polymicrobial interactions differed by number and species of bacteria present. Antimicrobial therapy and vaccination strategies targeting specific bacterial species may alter the flora in unforeseen ways.
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