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Updated: Jun 29, 2026

Understanding the Impact of Temperate Bacteriophages on Their Lysogens Through Transcriptomics
Published on: January 5, 2024
Characterization of Streptococcus gordonii prophage PH15: complete genome sequence and functional analysis of
1Institute of Oral Biology, University of Zürich, Plattenstrasse 11, 8032 Zürich, Switzerland.
Abstract:
Streptococcus gordonii OMZ1039, isolated from supragingival dental plaque, was found to harbour a prophage, PH15, whose excision could be induced by mitomycin treatment. Phage PH15 belongs to the Siphoviridae. The complete genome sequence of PH15 was determined. The genome was 39 136 bp in size and contained 61 ORFs. The genome of PH15 was most similar in the structural module to the temperate bacteriophages MM1 and phiNIH1.1 from Streptococcus pneumoniae and Streptococcus pyogenes, respectively. In strain OMZ1039, PH15 was found to reside as a prophage in the cysteinyl-tRNA gene. A plasmid, harbouring the attP site and the integrase gene downstream of a constitutive promoter, was capable of site-specific integration into the genomes of different oral streptococcal species. The phage endolysin was purified after expression in Escherichia coli and found to inhibit growth of all S. gordonii strains tested and several different streptococcal species, including the pathogens Streptococcus mutans, S. pyogenes and Streptococcus agalactiae.
Insights
Researchers identified a novel bacteriophage, PH15, in Streptococcus gordonii. This phage exhibits potential for controlling oral streptococcal infections, including pathogens like Streptococcus mutans.
Area of Science:
- Microbiology
- Virology
- Genomics
Background:
- Streptococcus gordonii, a common inhabitant of dental plaque, can harbor prophages.
- Prophages are viral DNA integrated into the host genome, which can influence bacterial properties.
Purpose of the Study:
- To characterize the prophage PH15 found in Streptococcus gordonii OMZ1039.
- To investigate the integration mechanism and potential therapeutic applications of phage PH15 components.
Main Methods:
- Induction of prophage excision using mitomycin C.
- Whole-genome sequencing of bacteriophage PH15.
- Site-specific integration assays using a constructed plasmid.
- Purification and testing of phage endolysin activity.
Main Results:
- The complete genome of PH15 (39,136 bp, 61 ORFs) was determined, revealing similarity to other temperate phages.
- PH15 integrates into the cysteinyl-tRNA gene of S. gordonii.
- A plasmid facilitated site-specific integration into various oral streptococcal species.
- Purified phage endolysin inhibited the growth of multiple streptococcal species, including pathogens.
Conclusions:
- Bacteriophage PH15 is a novel Siphoviridae phage with a characterized genome and integration site.
- The phage's integration system and endolysin show promise for developing novel strategies against oral streptococcal infections.
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