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Purification of Ubiquitinated p53 Proteins from Mammalian Cells
Published on: March 21, 2022
Regulation of proliferating cell nuclear antigen ubiquitination in mammalian cells
Atsuko Niimi1, Stephanie Brown, Simone Sabbioneda
1Genome Damage and Stability Centre, University of Sussex, Falmer, Brighton BN1 9RQ, United Kingdom.
Abstract:
After exposure to DNA-damaging agents that block the progress of the replication fork, monoubiquitination of proliferating cell nuclear antigen (PCNA) mediates the switch from replicative to translesion synthesis DNA polymerases. We show that in human cells, PCNA is monoubiquitinated in response to methyl methanesulfonate and mitomycin C, as well as UV light, albeit with different kinetics, but not in response to bleomycin or camptothecin. Cyclobutane pyrimidine dimers are responsible for most of the PCNA ubiquitination events after UV-irradiation. Failure to ubiquitinate PCNA results in substantial sensitivity to UV and methyl methanesulfonate, but not to camptothecin or bleomycin. PCNA ubiquitination depends on Replication Protein A (RPA), but is independent of ATR-mediated checkpoint activation. After UV-irradiation, there is a temporal correlation between the disappearance of the deubiquitinating enzyme USP1 and the presence of PCNA ubiquitination, but this correlation was not found after chemical mutagen treatment. By using cells expressing photolyases, we are able to remove the UV lesions, and we show that PCNA ubiquitination persists for many hours after the damage has been removed. We present a model of translesion synthesis behind the replication fork to explain the persistence of ubiquitinated PCNA.
Insights
Monoubiquitination of proliferating cell nuclear antigen (PCNA) is crucial for DNA repair. This process, triggered by specific DNA-damaging agents, facilitates the switch to specialized DNA polymerases for translesion synthesis.
Area of Science:
- Molecular Biology
- DNA Repair Mechanisms
- Cellular Response to DNA Damage
Background:
- DNA damage triggers cellular responses to maintain genomic integrity.
- Proliferating cell nuclear antigen (PCNA) plays a key role in DNA replication and repair.
- Monoubiquitination of PCNA is a critical step in coordinating DNA repair pathways.
Purpose of the Study:
- To investigate the role of PCNA monoubiquitination in response to various DNA-damaging agents.
- To elucidate the factors influencing PCNA ubiquitination kinetics and dependency.
- To understand the implications of impaired PCNA ubiquitination on cellular sensitivity to DNA damage.
Main Methods:
- Treatment of human cells with diverse DNA-damaging agents (UV light, methyl methanesulfonate, mitomycin C, bleomycin, camptothecin).
- Assessment of PCNA ubiquitination levels using immunoblotting.
- Analysis of DNA repair pathway involvement (RPA, ATR).
- Utilizing photolyase-expressing cells to remove UV lesions and study persistence of PCNA ubiquitination.
Main Results:
- PCNA monoubiquitination occurs in response to UV light, methyl methanesulfonate, and mitomycin C, but not bleomycin or camptothecin.
- Cyclobutane pyrimidine dimers are the primary drivers of UV-induced PCNA ubiquitination.
- Failure to ubiquitinate PCNA leads to increased sensitivity to UV and methyl methanesulfonate.
- PCNA ubiquitination is dependent on Replication Protein A (RPA) but independent of ATR signaling.
- Ubiquitinated PCNA persists long after UV damage removal, suggesting a role in post-lesion bypass.
Conclusions:
- PCNA monoubiquitination is a conserved response to specific DNA replication fork-blocking lesions.
- The kinetics and dependency of PCNA ubiquitination vary with the type of DNA damage.
- PCNA ubiquitination is essential for tolerance to certain DNA damaging agents.
- A model for translesion synthesis operating behind the replication fork is proposed to explain persistent PCNA ubiquitination.
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