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Updated: May 10, 2026

Analysis of DNA Double-strand Break (DSB) Repair in Mammalian Cells
Published on: September 9, 2010
Mre11 dimers coordinate DNA end bridging and nuclease processing in double-strand-break repair
R Scott Williams1, Gabriel Moncalian, Jessica S Williams
1Department of Molecular Biology, Scripps Research Institute, 10550 North Torrey Pines Road, MB4, La Jolla, CA 92037, USA.
Abstract:
Mre11 forms the core of the multifunctional Mre11-Rad50-Nbs1 (MRN) complex that detects DNA double-strand breaks (DSBs), activates the ATM checkpoint kinase, and initiates homologous recombination (HR) repair of DSBs. To define the roles of Mre11 in both DNA bridging and nucleolytic processing during initiation of DSB repair, we combined small-angle X-ray scattering (SAXS) and crystal structures of Pyrococcus furiosus Mre11 dimers bound to DNA with mutational analyses of fission yeast Mre11. The Mre11 dimer adopts a four-lobed U-shaped structure that is critical for proper MRN complex assembly and for binding and aligning DNA ends. Further, mutations blocking Mre11 endonuclease activity impair cell survival after DSB induction without compromising MRN complex assembly or Mre11-dependant recruitment of Ctp1, an HR factor, to DSBs. These results show how Mre11 dimerization and nuclease activities initiate repair of DSBs and collapsed replication forks, as well as provide a molecular foundation for understanding cancer-causing Mre11 mutations in ataxia telangiectasia-like disorder (ATLD).
Insights
The Mre11-Rad50-Nbs1 (MRN) complex initiates DNA double-strand break (DSB) repair. Mre11
Area of Science:
- Molecular Biology
- DNA Repair Mechanisms
- Structural Biology
Background:
- The Mre11-Rad50-Nbs1 (MRN) complex is crucial for detecting DNA double-strand breaks (DSBs).
- MRN complex activates the ATM checkpoint kinase and initiates homologous recombination (HR) repair.
- Understanding Mre11's dual roles in DNA bridging and nucleolytic processing is key to DSB repair.
Purpose of the Study:
- To elucidate the structural and functional roles of Mre11 in initiating DSB repair.
- To investigate how Mre11 dimerization and endonuclease activity contribute to DNA repair pathways.
- To provide a molecular basis for understanding Mre11 mutations linked to ataxia telangiectasia-like disorder (ATLD).
Main Methods:
- Combined small-angle X-ray scattering (SAXS) and crystal structures of Pyrococcus furiosus Mre11.
- Utilized mutational analyses of fission yeast Mre11 to assess functional impacts.
- Investigated Mre11 dimer-DNA interactions and endonuclease activity.
Main Results:
- Mre11 dimer adopts a U-shaped structure essential for MRN complex assembly and DNA end binding.
- Mutations impairing Mre11 endonuclease activity compromise cell survival after DSB induction.
- Loss of endonuclease activity did not affect MRN assembly or Ctp1 recruitment to DSBs.
Conclusions:
- Mre11 dimerization and nuclease activities are critical for initiating DSB and collapsed replication fork repair.
- The study provides structural insights into Mre11's function in DNA repair.
- Findings offer a molecular foundation for understanding ATLD-associated Mre11 mutations.
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