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A Method for Screening and Validation of Resistant Mutations Against Kinase Inhibitors
Published on: December 7, 2014
Kinase requirements in human cells: II. Genetic interaction screens identify kinase requirements following HPV16 E7
Amy Baldwin1, Wenliang Li, Miranda Grace
1The Channing Laboratory, Brigham and Women's Hospital and Department of Medicine, Harvard Medical School, 181 Longwood Avenue, Boston, MA 02115.
Abstract:
Human papillomavirus (HPV) oncoproteins subvert cellular signaling pathways, including kinase pathways, during the carcinogenic process. To identify kinases targeted by the HPV16 E7 oncoprotein, shRNA kinase screens were performed in RKO colorectal carcinoma cell lines that differ only in their expression of HPV16 E7. Our screens identified kinases that were essential for the survival of RKO cells, but not essential for RKO cells expressing HPV16 E7. These kinases include CDK6, ERBB3, FYN, AAK1, and TSSK2. We show that, as predicted, CDK6 knockdown inhibits pRb phosphorylation and induces S-phase depletion, thereby inhibiting cell viability. Knockdown of ERBB3, FYN, AAK1, and TSSK2 induces a similar loss of cell viability through an unknown mechanism. Expression of the HPV16 E7 oncoprotein, known to bind and degrade pRb, relieves the requirement of these kinases. These studies demonstate that expression of a single oncoprotein can dramatically alter kinase sensitivity in human cells. The shRNA screens used here perform analogously to genetic interaction screens commonly used in genetically tractable organisms such as yeast, and thus represent an exciting method for unbiased identification of cellular signaling pathways targeted by cancer mutations.
Insights
Human papillomavirus (HPV) oncoproteins hijack cellular pathways. HPV16 E7 oncoprotein alters kinase dependence, identifying novel therapeutic targets like CDK6, ERBB3, FYN, AAK1, and TSSK2 for colorectal cancer.
Area of Science:
- Oncology
- Molecular Biology
- Virology
Background:
- Human papillomavirus (HPV) oncoproteins disrupt cellular signaling pathways, contributing to cancer development.
- The HPV16 E7 oncoprotein is known to subvert cellular processes, including kinase pathways, during carcinogenesis.
Purpose of the Study:
- To identify specific kinases targeted by the HPV16 E7 oncoprotein.
- To understand how HPV16 E7 expression alters cellular dependence on certain kinases for survival.
Main Methods:
- Utilized shRNA kinase screens in RKO colorectal carcinoma cell lines with and without HPV16 E7 expression.
- Performed knockdown of identified essential kinases (CDK6, ERBB3, FYN, AAK1, TSSK2) to assess impact on cell viability.
Main Results:
- Identified CDK6, ERBB3, FYN, AAK1, and TSSK2 as kinases essential for RKO cell survival but not for cells expressing HPV16 E7.
- Confirmed CDK6 knockdown inhibits pRb phosphorylation, depletes S-phase, and reduces cell viability.
- Observed similar viability loss upon knockdown of ERBB3, FYN, AAK1, and TSSK2 via an uncharacterized mechanism.
Conclusions:
- Expression of the HPV16 E7 oncoprotein significantly alters cellular kinase dependency, potentially by degrading pRb.
- These findings highlight a novel method for unbiased identification of signaling pathways targeted by oncoproteins, analogous to genetic interaction screens.
- The identified kinases represent potential therapeutic targets in HPV-associated cancers.
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