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Updated: Jun 28, 2026

10:28
A Semi-High-Throughput Adaptation of the NADH-Coupled ATPase Assay for Screening Small Molecule Inhibitors
Published on: August 17, 2019
Summary
This study reveals how magnesium cofactors interact with adenosinetriphosphate (ATP) in water. It details pathways for ATP cleavage, explaining the formation of reactive intermediates observed in experiments.
Area of Science:
- Computational Chemistry
- Biophysical Chemistry
- Quantum Chemistry
Context:
- Adenosinetriphosphate (ATP) hydrolysis is crucial for cellular energy.
- Magnesium ions (Mg2+) are essential cofactors in biological processes involving ATP.
- Understanding the molecular mechanisms of ATP interaction with Mg2+ is key to elucidating energy transduction.
Purpose:
- To investigate the interactions between ATP and a magnesium cofactor ([Mg(H2O)6]2+) in a water environment using molecular dynamics.
- To explore the potential energy surfaces (PESs) in singlet (S) and triplet (T) states.
- To elucidate the reaction pathways and intermediate states leading to ATP cleavage.
Summary:
- Molecular dynamics simulations using DFT:B3LYP identified distinct interaction pathways for the Mg cofactor with ATP in singlet and triplet states.
- Chelation of ATP's phosphate groups by Mg2+ leads to stable and metastable complexes, differing in hydration.
- An intersection of triplet PESs creates an unstable state, facilitating ATP cleavage via an ion-radical pathway, producing *AMP-.
Impact:
- Provides a detailed molecular-level understanding of ATP hydrolysis mechanisms.
- Explains the formation of reactive intermediates like *AMP-, previously observed in Chemically Induced Dynamic Nuclear Polarization (CIDNP) experiments.
- Offers insights into the role of magnesium in ATP energy release and potential biological consequences.
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