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Updated: Jun 28, 2026

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
Published on: June 11, 2015
[Biologic characteristics of eight Podoviridae Stx2-converting phage]
Luming Xia1, Liangke Su, Jianhe Sun
1Shanghai Key Laboratory of Veterinary Biotechnology, School of Agriculture and Biology, Shanghai Jiaotong University, Shanghai 201101, China. xialuming@tom.com
Objective:
We studied biologic characteristics of Stx2-converting phage induced from Escherichia coli O157 by mitomycin C.
Methods:
Eight Stx2-converting phages were isolated from E. coli O157 and identified by PCR. The phage particles were purified and phage DNA was extracted. Random priming digoxin (DIG)-labeled stx2-specific gene probe was prepared for Southern blot. The morphology of these phages were studied by electron microscopy. Protein profiles were analyzed by Sodium Dodecyl Sulphate PolyAcrylamide Gel Electrophoresis (SDS-PAGE). Restriction fragment length polymorphism (RFLP) was used to confirm the size, type, and polymorphism of the purified phage genome.
Results:
These 8 phages were confirmed Stx2-converting phage and DIG-labeled probe was highly specific. All phages had a regular hexagonal head and a short tail, belonging to Podoviridae phage families. The Stx2 phages had genome sizes in the range of 48 to 65.3kb, consisting of double-stranded DNA. The restriction fragment length polymorphism of these phages showed different groups, although the SDS-PAGE protein profiles of these phages were similar.
Conclusion:
These 8 Stx2-converting phages with similar morphology belonged to Podoviridae phage families. The protein profiles were highly identical. We could differentiate these Stx2-converting phages according to their restriction fragment length polymorphism patterns.
Insights
This study characterized eight Stx2-converting phages from Escherichia coli O157. Restriction fragment length polymorphism successfully differentiated these phages, despite similar morphology and protein profiles.
Area of Science:
- Microbiology
- Virology
- Bacteriology
Context:
- Escherichia coli O157 is a significant foodborne pathogen.
- Shiga toxin 2 (Stx2) is a key virulence factor produced by certain E. coli strains.
- Bacteriophages, viruses that infect bacteria, can carry virulence genes like stx2.
Purpose:
- To investigate the biological characteristics of Stx2-converting phages isolated from E. coli O157.
- To analyze phage morphology, genome size, and protein profiles.
- To determine if Restriction Fragment Length Polymorphism (RFLP) can differentiate these phages.
Summary:
- Eight Stx2-converting phages were isolated from E. coli O157 and confirmed using PCR and a specific gene probe.
- Electron microscopy revealed a consistent morphology (hexagonal head, short tail) consistent with the Podoviridae family.
- Phage genomes (48-65.3kb double-stranded DNA) and protein profiles (SDS-PAGE) were analyzed.
- Restriction Fragment Length Polymorphism (RFLP) demonstrated distinct patterns among the phages, allowing for differentiation.
Impact:
- Provides detailed characterization of Stx2-converting phages relevant to E. coli O157.
- Highlights the utility of RFLP as a discriminatory tool for Stx2-converting phages.
- Contributes to understanding phage diversity and its role in bacterial pathogenicity.
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