Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Nucleosome Remodeling02:54

Nucleosome Remodeling

8.7K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
8.7K
Spreading of Chromatin Modifications02:25

Spreading of Chromatin Modifications

8.1K
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
8.1K
Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

22.5K
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
22.5K
Exon Recombination02:32

Exon Recombination

3.1K
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes. 
Exon shuffling follows “splice frame rules.” Each exon...
3.1K
Duplication of Chromatin Structure02:05

Duplication of Chromatin Structure

6.1K
The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
6.1K
Chromatin Modification in iPS Cells01:32

Chromatin Modification in iPS Cells

1.5K
Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
1.5K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Mechanism of MutLβ-dependent DNA expansions.

Proceedings of the National Academy of Sciences of the United States of AmericaĀ·2026
Same author

Huntington disease: somatic expansion, pathobiology and therapeutics.

Nature reviews. NeurologyĀ·2025
Same author

A genome-wide approach for the discovery of novel repeat expansion disorders in the Undiagnosed Diseases Network cohort.

Genetics in medicine : official journal of the American College of Medical GeneticsĀ·2025
Same author

MSH2 is not required for either maintenance of DNA methylation or repeat contraction at the FMR1 locus in fragile X syndrome or the FXN locus in Friedreich's ataxia.

Epigenetics & chromatinĀ·2025
Same author

Tissue-Specific Effects of the DNA Helicase FANCJ/BRIP1/BACH1 on Repeat Expansion in a Mouse Model of the Fragile X-Related Disorders.

International journal of molecular sciencesĀ·2025
Same author

3A or not 3A: Cytidine deaminases in the etiology of the CAG-repeat expansion diseases.

Proceedings of the National Academy of Sciences of the United States of AmericaĀ·2025

Related Experiment Video

Updated: Apr 29, 2026

Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions
10:16

Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions

Published on: June 28, 2018

34.4K

Chromatin remodeling in the noncoding repeat expansion diseases.

Daman Kumari1, Karen Usdin

  • 1Section on Gene Structure and Disease, Laboratory of Molecular and Cellular Biology, NIDDK, National Institutes of Health, Bethesda, Maryland 20892-0830, USA.

The Journal of Biological Chemistry
|October 30, 2008
PubMed
Summary

Repeat expansion diseases like Friedreich ataxia share a common property: their expanded DNA repeats can trigger epigenetic changes, leading to heterochromatin formation and disease symptoms.

More Related Videos

CRISPR-Mediated Reorganization of Chromatin Loop Structure
09:20

CRISPR-Mediated Reorganization of Chromatin Loop Structure

Published on: September 14, 2018

14.2K
Author Spotlight: Characterizing DNA Replication of Pathogenic Repeats to Uncover Mechanisms of Replication Fork Stalling and Expansion
05:22

Author Spotlight: Characterizing DNA Replication of Pathogenic Repeats to Uncover Mechanisms of Replication Fork Stalling and Expansion

Published on: September 13, 2024

1.3K

Related Experiment Videos

Last Updated: Apr 29, 2026

Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions
10:16

Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions

Published on: June 28, 2018

34.4K
CRISPR-Mediated Reorganization of Chromatin Loop Structure
09:20

CRISPR-Mediated Reorganization of Chromatin Loop Structure

Published on: September 14, 2018

14.2K
Author Spotlight: Characterizing DNA Replication of Pathogenic Repeats to Uncover Mechanisms of Replication Fork Stalling and Expansion
05:22

Author Spotlight: Characterizing DNA Replication of Pathogenic Repeats to Uncover Mechanisms of Replication Fork Stalling and Expansion

Published on: September 13, 2024

1.3K

Area of Science:

  • Genetics
  • Epigenetics
  • Molecular Biology

Background:

  • Repeat expansion diseases are a group of genetic disorders caused by the expansion of repetitive DNA sequences.
  • These diseases include Friedreich ataxia, myotonic dystrophy type 1, and various forms of intellectual disability such as fragile X syndrome.
  • The expanded repeats are transcribed into RNA but not translated into protein, and their location varies across different genes.

Purpose of the Study:

  • To investigate a potential shared property among different repeat expansion diseases.
  • To explore the hypothesis that expanded DNA repeats may initiate common epigenetic alterations.
  • To understand the mechanism of heterochromatin formation in repeat expansion disorders.

Main Methods:

  • Analysis of genetic data from patients with various repeat expansion diseases.
  • Investigating the transcriptional activity of expanded repeat tracts.
  • Examining epigenetic modifications, specifically heterochromatin formation, at the sites of repeat expansions.

Main Results:

  • Expanded CTG.CAG, GAA.TTC, and CGG.CCG repeat tracts are transcribed in affected individuals.
  • These repeats, despite their diverse locations and associated symptoms, share the ability to initiate epigenetic changes.
  • Evidence suggests that these epigenetic changes lead to the formation of heterochromatin.

Conclusions:

  • Expanded repeats in genetic disorders share a common functional property.
  • This property involves the initiation of repeat-mediated epigenetic changes.
  • Heterochromatin formation is a likely common mechanism underlying the diverse clinical manifestations of these repeat expansion diseases.