Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

'Candidatus Ornithobacterium hominis': insights gained from draft genomes obtained from nasopharyngeal swabs.

Microbial genomics·2019
Same author

Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii.

Microbial genomics·2019
Same author

Prospective genomic surveillance of methicillin-resistant <i>Staphylococcus aureus</i> (MRSA) associated with bloodstream infection, England, 1 October 2012 to 30 September 2013.

Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin·2019
Same author

One Health Genomic Surveillance of Escherichia coli Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolates from Humans versus Livestock.

mBio·2019
Same author

Separating Bacteria by Capsule Amount Using a Discontinuous Density Gradient.

Journal of visualized experiments : JoVE·2019
Same author

Molecular epidemiology and expression of capsular polysaccharides in Staphylococcus aureus clinical isolates in the United States.

PloS one·2019
Same journal

Biomedical Concept Recognition with Error-aware Negative-enhanced Ranking Framework.

Bioinformatics (Oxford, England)·2026
Same journal

TEDLH: Domain HMMs for sensitive detection of remote homologues.

Bioinformatics (Oxford, England)·2026
Same journal

PLNFGL: Joint Estimation of Multi-Condition Gene Networks from Single-cell RNA-seq Data.

Bioinformatics (Oxford, England)·2026
Same journal

MCFST: Spatial domain identification method based on multi-view graph convolutional network and graph fusion network.

Bioinformatics (Oxford, England)·2026
Same journal

SpaBiT: Enhancing Spatial Transcriptomics Resolution via Bidirectional Attention Transformers.

Bioinformatics (Oxford, England)·2026
Same journal

EDEL: Enhancing Dense Retrievers for Curation of Biomedical Knowledge Bases.

Bioinformatics (Oxford, England)·2026
See all related articles

Related Experiment Video

Updated: Jun 28, 2026

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
10:44

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

Published on: December 7, 2021

DNAPlotter: circular and linear interactive genome visualization.

Tim Carver1, Nick Thomson, Alan Bleasby

  • 1Wellcome Trust Sanger Institute, CB10 1SA and European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK. artemis@sanger.ac.uk

Bioinformatics (Oxford, England)
|November 8, 2008
PubMed
Summary
This summary is machine-generated.

DNAPlotter is a Java application that creates circular and linear genome maps. It visualizes genomic data from various file formats and databases, aiding in the creation of publication-quality figures.

More Related Videos

Informatic Analysis of Sequence Data from Batch Yeast 2-Hybrid Screens
09:14

Informatic Analysis of Sequence Data from Batch Yeast 2-Hybrid Screens

Published on: June 28, 2018

Analyzing and Building Nucleic Acid Structures with 3DNA
16:24

Analyzing and Building Nucleic Acid Structures with 3DNA

Published on: April 26, 2013

Related Experiment Videos

Last Updated: Jun 28, 2026

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
10:44

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

Published on: December 7, 2021

Informatic Analysis of Sequence Data from Batch Yeast 2-Hybrid Screens
09:14

Informatic Analysis of Sequence Data from Batch Yeast 2-Hybrid Screens

Published on: June 28, 2018

Analyzing and Building Nucleic Acid Structures with 3DNA
16:24

Analyzing and Building Nucleic Acid Structures with 3DNA

Published on: April 26, 2013

Area of Science:

  • Bioinformatics
  • Genomics
  • Computational Biology

Background:

  • Genome visualization is crucial for understanding genetic information.
  • Existing tools may lack flexibility in data input and feature display.

Purpose of the Study:

  • To introduce DNAPlotter, a user-friendly Java application for genome visualization.
  • To provide a flexible tool for generating circular and linear genome representations.

Main Methods:

  • Utilizes Artemis libraries for sequence file (EMBL, GenBank, GFF) and relational database integration.
  • Features user-definable tracks for filtering and displaying specific genomic elements.
  • Generates high-quality images for publications and web use.

Main Results:

  • DNAPlotter successfully generates both circular and linear genome maps.
  • The application allows for interactive filtering and display of genomic features.
  • Publication-quality images can be produced efficiently.

Conclusions:

  • DNAPlotter offers a versatile and accessible solution for genome visualization.
  • Its user-friendly interface and customizable tracks enhance genomic data analysis.
  • The tool supports the dissemination of genomic research through high-quality visual outputs.