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Published on: December 23, 2022
Large clonal outbreak of multidrug-resistant CC17 ST17 Enterococcus faecium containing Tn5382 in a Spanish hospital
Sylvia Valdezate1, Cristina Labayru, Ana Navarro
1Departamento de Bacteriología, Centro Nacional de Microbiología, Instituto de Salud Carlos III, Majadahonda, Madrid, Spain. svaldezate@isciii.es
Objectives:
A large clonal outbreak of multidrug-resistant CC17 ST17 Enterococcus faecium containing Tn5382 in a hospital in the north of Spain is described.
Methods:
We characterized vancomycin-resistant E. faecium isolates from 10 infected and 40 colonized inpatients from a single hospital by PFGE, multiple-locus variable-number tandem-repeat analysis (MLVA) and multilocus sequence typing (MLST). Genes encoding antibiotic resistance (ampicillin, aminoglycosides, macrolides, quinupristin/dalfopristin, quinolones, tetracycline) and putative virulence traits were analysed.
Results:
All isolates showed highly similar PFGE profiles and were assigned to the type MT1 by MLVA and to ST17 (CC17) by MLST. The Tn5382 type identified in all isolates was linked to pbp5 and contained a 5 bp deletion and 10 point mutations within the intergenic vanS(B)-vanY(B) region. Other resistance genes identified were erm(B), mef(E), tet(M), ant(6')-Ia, aph(3')-IIIa and aac(6')-Ie-aph(2'')-Ia. All isolates carried the unexpressed tet(M) gene. The high level of ciprofloxacin resistance was attributable to the first described Gly-61 and Ile-80 mutations in ParC and the Tyr-83 or Arg-83 mutations in GyrA. All isolates contained esp. The presence of hyl was variable.
Conclusions:
A large clonal outbreak caused by multidrug-resistant CC17 E. faecium containing pbp5-Tn5382 is described. The persistence of this clone, which has been recovered from both hospital and community settings since 2005, and the possibility of transferring this Tn5382 to other epidemic ampicillin-resistant clonal types currently circulating in Spain might contribute to increasing the prevalence of vancomycin-resistant enterococci in our area. This study constitutes the first description of mef(E) in E. faecium.
Insights
A clonal outbreak of multidrug-resistant Enterococcus faecium (CC17 ST17) carrying Tn5382 was identified in a Spanish hospital. This persistent clone, found in both hospital and community settings, may increase vancomycin-resistant enterococci prevalence.
Area of Science:
- Microbiology
- Infectious Diseases
- Genetics
Background:
- Enterococcus faecium is a significant cause of hospital-acquired infections.
- Multidrug resistance in E. faecium, particularly vancomycin resistance, poses a major public health threat.
- Clonal spread of specific E. faecium strains contributes to the dissemination of antibiotic resistance.
Purpose of the Study:
- To characterize a large clonal outbreak of multidrug-resistant Enterococcus faecium (E. faecium) in a Spanish hospital.
- To investigate the genetic basis of antibiotic resistance and virulence in the outbreak strain.
- To assess the potential impact of this clone on the prevalence of vancomycin-resistant enterococci.
Main Methods:
- Molecular typing of E. faecium isolates using pulsed-field gel electrophoresis (PFGE), multiple-locus variable-number tandem-repeat analysis (MLVA), and multilocus sequence typing (MLST).
- Analysis of genes encoding resistance to ampicillin, aminoglycosides, macrolides, quinupristin/dalfopristin, quinolones, and tetracycline.
- Identification and characterization of mobile genetic elements, including Tn5382, and virulence factors such as esp and hyl.
Main Results:
- All isolates belonged to a single clone, identified as CC17 ST17 by MLST and MT1 by MLVA, exhibiting highly similar PFGE profiles.
- The vancomycin-resistant E. faecium isolates carried the Tn5382 element linked to the pbp5 gene, with specific mutations in the vanS(B)-vanY(B) intergenic region.
- Multiple resistance genes (erm(B), mef(E), tet(M), ant(6')-Ia, aph(3')-IIIa, aac(6')-Ie-aph(2'')-Ia) were identified, along with high-level ciprofloxacin resistance due to specific mutations in ParC and GyrA. The esp gene was universally present, while hyl was variable.
Conclusions:
- A large clonal outbreak caused by multidrug-resistant CC17 E. faecium harboring pbp5-Tn5382 was described.
- The persistence of this clone since 2005 in both hospital and community settings, coupled with the potential transfer of Tn5382 to other epidemic strains, may increase vancomycin-resistant enterococci prevalence.
- This study reports the first description of the mef(E) gene in E. faecium.
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