Expression profiles in surgically-induced carotid stenosis: a combined transcriptomic and proteomic investigation
A Forte1, M Finicelli, P De Luca
1Excellence Research Center for Cardiovascular Diseases, Department of Experimental Medicine, Second University of Naples, Italy. amalia.forte@unina2.it
Abstract:
Vascular injury aimed at stenosis removal induces local reactions often leading to restenosis. The aim of this study was a concerted transcriptomic-proteomics analysis of molecular variations in a model of rat carotid arteriotomy, to dissect the molecular pathways triggered by vascular surgical injury and to identify new potential anti-restenosis targets. RNA and proteins extracted from inbred Wistar Kyoro (WKY) rat carotids harvested 4 hrs, 48 hrs and 7 days after arteriotomy were analysed by Affymetrix rat microarrays and by bidimensional electrophoresis followed by liquid chromatography and tandem mass spectrometry, using as reference the RNA and the proteins extracted from uninjured rat carotids. Results were classified according to their biological function, and the most significant Kyoro Encyclopedia of Genes and Genomes (KEGG) pathways were identified. A total of 1163 mRNAs were differentially regulated in arteriotomy-injured carotids 4 hrs, 48 hrs and 7 days after injury (P < 0.0001, fold-change > or =2), while 48 spots exhibited significant changes after carotid arteriotomy (P < 0.05, fold-change > or =2). Among them, 16 spots were successfully identified and resulted to correspond to a set of 19 proteins. mRNAs were mainly involved in signal transduction, oxidative stress/inflammation and remodelling, including many new potential targets for limitation of surgically induced (re)stenosis (e.g. Arginase I, Kruppel like factors). Proteome analysis confirmed and extended the microrarray data, revealing time-dependent post-translational modifications of Hsp27, haptoglobin and contrapsin-like protease inhibitor 6, and the differential expression of proteins mainly involved in contractility. Transcriptomic and proteomic methods revealed functional categories with different preferences, related to the experimental sensitivity and to mechanisms of regulation. The comparative analysis revealed correlation between transcriptional and translational expression for 47% of identified proteins. Exceptions from this correlation confirm the complementarities of these approaches.
Insights
This study used transcriptomic and proteomic analyses to understand molecular changes after carotid arteriotomy in rats. Researchers identified potential new targets, like Arginase I, to prevent restenosis after vascular injury.
Area of Science:
- Molecular biology
- Vascular biology
- Proteomics and transcriptomics
Background:
- Vascular injury from stenosis removal can cause restenosis.
- Understanding molecular responses to injury is key for developing treatments.
Purpose of the Study:
- To perform a combined transcriptomic-proteomic analysis of molecular variations in a rat carotid arteriotomy model.
- To identify molecular pathways triggered by vascular surgical injury.
- To discover novel anti-restenosis targets.
Main Methods:
- Collected rat carotid arteries at 4 hours, 48 hours, and 7 days post-arteriotomy.
- Analyzed RNA using Affymetrix rat microarrays and proteins via 2D electrophoresis, LC-MS/MS.
- Compared injured samples to uninjured controls.
Main Results:
- 1163 differentially regulated mRNAs and 19 identified proteins were found.
- Key pathways included signal transduction, oxidative stress/inflammation, and remodeling.
- Proteomics revealed post-translational modifications and differential protein expression, particularly in contractility.
Conclusions:
- Transcriptomic and proteomic analyses provide complementary insights into post-injury molecular responses.
- Identified targets like Arginase I and Kruppel-like factors show promise for limiting restenosis.
- Correlation between transcriptomic and proteomic data was observed in 47% of identified proteins.
