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Updated: Jun 27, 2026

Synthesizing Amino Acids Modified with Reactive Carbonyls in Silico to Assess Structural Effects Using Molecular Dynamics Simulations
Published on: April 26, 2024
Excision of CN(-) and OCN(-) from acetamide and some amide derivatives triggered by low energy electrons
Constanze Koenig-Lehmann1, Janina Kopyra, Iwona Dabkowska
1Institut für Chemie und Biochemie - Physikalische und Theoretische Chemie, Freie Universität Berlin, Takustrasse 3, D-1495, Berlin, Germany.
Abstract:
Low energy electron attachment to acetamide and some of its derivatives shows unique features in that the unimolecular reactions of the transient anions are remarkably complex, involving multiple bond cleavages and the formation of new molecules. Each of the three compounds acetamide (CH(3)C(O)NH(2)), glycolamide (CH(2)OHC(O)NH(2)) and cyanoacetamide (CH(2)CNC(O)NH(2)) shows a pronounced resonance located near 2 eV and decomposing into CN(-) along a concerted reaction forming a neutral H(2)O molecule and the corresponding radical (methyl and methoxy). From glycolamide an additional reaction pathway resulting in the loss of water is operative, in this case generating two fragments and observable via the complementary anion (M-H(2)O)(-). The pseudohalogen OCN(-) is formed at comparatively lower intensity having a specific energy profile for each of the target molecules. In dibromocyanoacetamide (CBr(2)CNC(O)NH(2)) the situation changes completely as now comparatively intense CN(-) and OCN(-) signals appear already near zero eV. Electronic structure calculations predict that in dibromocyanoacetamide the extra electron resides in a molecular orbital (MO) which is strongly localized at the Br sites. For the other compounds, the relevant MOs are appreciably delocalized showing pi*(C=O) character.
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Amides to Carboxylic Acids: Hydrolysis
Acid-catalyzed hydrolysis:
Hydrolysis of amides under acidic conditions yields carboxylic acids. Since the reaction occurs slowly, hydrolysis requires the conditions of heat.
The mechanism begins with the protonation of the carbonyl oxygen by the acid catalyst. The protonation makes the amide carbonyl carbon more...

