Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element

Ram Krishna Thakur1, Praveen Kumar, Kangkan Halder

  • 1Proteomics and Structural Biology Unit, Institute of Genomics and Integrative Biology, CSIR, Delhi, India.

Nucleic Acids Research
|November 27, 2008
PubMed

Insights

NM23-H2 protein directly binds to the G-quadruplex (G4) motif in the c-MYC gene promoter. This interaction is crucial for activating c-MYC gene expression, revealing a novel transcriptional mechanism.

Area of Science:

  • Molecular Biology
  • Gene Regulation
  • Biochemistry

Background:

  • The c-MYC gene promoter contains a nuclease hypersensitive element (NHE) with a G-quadruplex (G4) motif, known to influence gene regulation.
  • The protein NM23-H2 has been associated with the activation of c-MYC.

Purpose of the Study:

  • To investigate the mechanistic link between NM23-H2 and the G4 motif within the c-MYC NHE.
  • To determine if NM23-H2 directly interacts with the G4 motif and if this binding is responsible for c-MYC activation.

Main Methods:

  • Luciferase reporter assays were employed to assess c-MYC promoter activity.
  • Chromatin immunoprecipitation (ChIP) was used to detect NM23-H2 binding to the c-MYC NHE.
  • Fluorescence energy transfer (FRET) assays were utilized to confirm direct binding between NM23-H2 and the G4 motif.

Main Results:

  • NM23-H2 mediated c-MYC activation was shown to involve direct binding to the G4 motif within the c-MYC NHE.
  • ChIP assays confirmed the association of NM23-H2 with the c-MYC NHE.
  • FRET analysis confirmed complex formation between recombinant NM23-H2 and the G4 motif, demonstrating G4 motif resolution upon binding.

Conclusions:

  • NM23-H2 directly binds to the G4 motif in the c-MYC NHE, leading to c-MYC transcriptional activation.
  • This study elucidates a novel mechanism for transcriptional regulation involving direct protein-G4 motif interaction.

Related Concept Videos

Abnormal Proliferation02:23

Abnormal Proliferation

Under normal conditions, most adult cells remain in a non-proliferative state unless stimulated by internal or external factors to replace lost cells. Abnormal cell proliferation is a condition in which the cell's growth exceeds and is uncoordinated with normal cells. In such situations, cell division persists in the same excessive manner even after cessation of the stimuli, leading to persistent tumors. The tumor arises from the damaged cells that replicate to pass the damage to the daughter...
Induced Pluripotent Stem Cells01:06

Induced Pluripotent Stem Cells

Stem cells are undifferentiated cells that divide and produce different cell types. Ordinarily, cells that have differentiated into a specific cell type are terminally differentiated; however, scientists have found a way to reprogram these mature cells so that they dedifferentiate and return to an unspecialized, proliferative state. These cells are pluripotent like embryonic stem cells—able to produce all cell types—and are called induced pluripotent stem cells (iPSCs).
Somatic cells are...
MicroRNAs01:22

MicroRNAs

MicroRNA (miRNA) are short, regulatory RNA transcribed from introns (non-coding regions of a gene) or intergenic regions (stretches of DNA present between genes). Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself, forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA...
MicroRNAs01:22

MicroRNAs

MicroRNA (miRNA) are short, regulatory RNA transcribed from introns—non-coding regions of a gene—or intergenic regions—stretches of DNA present between genes. Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA ends...
Cancer-Critical Genes II: Tumor Suppressor Genes01:05

Cancer-Critical Genes II: Tumor Suppressor Genes

Genes usually encode proteins necessary for the proper functioning of a healthy cell. Mutations can often cause changes to the gene expression pattern, thereby altering the phenotype.
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
Master Transcription Regulators02:23

Master Transcription Regulators

Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a  complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...