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Factors acting on Mos1 transposition efficiency
Ludivine Sinzelle1, Gwenhael Jégot, Benjamin Brillet
1Université François Rabelais de Tours, GICC, UFR des Sciences & Techniques, Parc Grandmont, 37200 Tours, France. sinzellel@yahoo.fr
Background:
Mariner-like elements (MLEs) are widespread DNA transposons in animal genomes. Although in vitro transposition reactions require only the transposase, various factors depending on the host, the physico-chemical environment and the transposon sequence can interfere with the MLEs transposition in vivo.
Results:
The transposition of Mos1, first isolated from drosophila mauritiana, depends of both the nucleic acid sequence of the DNA stuffer (in terms of GC content), and its length. We provide the first in vitro experimental demonstration that MITEs of MLE origin, as small as 80 to 120-bp, are able to transpose. Excessive temperature down-regulates Mos1 transposition, yielding excision products unable to re-integrate. Finally, the super-helicity of the DNA transposon donor has a dramatic impact on the transposition efficiency.
Conclusion:
The study highlights how experimental conditions can bias interpretation of mariner excision frequency and quality. In vitro, the auto-integration pathway markedly limits transposition efficiency to new target sites, and this phenomenon may also limit events in the natural host. We propose a model for small transposons transposition that bypasses DNA bending constraints.
Insights
Mariner-like elements (MLEs) transposition efficiency is influenced by DNA sequence, length, and super-helicity. Experimental conditions significantly impact transposition outcomes, with auto-integration limiting efficiency in vitro.
Area of Science:
- Genomics
- Molecular Biology
- Transposable Elements
Background:
- Mariner-like elements (MLEs) are common DNA transposons found in animal genomes.
- In vitro transposition requires only transposase, but host, environmental, and transposon sequence factors can affect in vivo transposition.
Purpose of the Study:
- To investigate factors influencing the transposition of Mos1, a Mariner-like element.
- To demonstrate in vitro transposition of MITEs (Miniature Inverted-repeat Transposable Elements) derived from MLEs.
- To explore the impact of experimental conditions on MLE transposition.
Main Methods:
- In vitro transposition assays using Mos1 and MLE-derived MITEs.
- Analysis of DNA stuffer sequence (GC content, length) and super-helicity effects.
- Temperature variation to assess transposition regulation.
Main Results:
- Mos1 transposition efficiency depends on DNA stuffer GC content and length.
- Successfully demonstrated in vitro transposition of small MITEs (80-120 bp).
- High temperatures reduce Mos1 transposition, leading to non-integrating products; DNA super-helicity significantly impacts efficiency.
Conclusions:
- Experimental conditions can significantly alter the interpretation of mariner excision frequency and quality.
- The auto-integration pathway limits in vitro transposition efficiency to new sites, a phenomenon potentially relevant in natural hosts.
- A model for small transposon transposition that circumvents DNA bending constraints is proposed.
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