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Updated: Jun 27, 2026

Biochemical and Structural Characterization of the Carbohydrate Transport Substrate-binding-protein SP0092
Published on: October 2, 2017
[Novel gene sequence variants of pbp2b in penicillin-nonsusceptible Streptococcus pneumonia isolates]
Su-Fei Tian1, Yun-Zhuo Chu, Bai-Yi Chen
1Division of Infectious Diseases, The First Affiliated Hospital, China Medical University, Shenyang, China.
Objective:
To investigate the alternations in gene/amino acid sequence of penicillin-binding protein (PBP)2b from clinical isolates of penicillin-nonsusceptible Streptococcus pneumonia (PNSP) in this region.
Methods:
24 strains of Streptococcus pneumonia were collected from January to December 2006. The antibiotics susceptibility of these strains was detected. PCR amplification and direct sequencing of pbp2b genes were performed. The sequence variations of PBP genes of the PNSP in this region were studied with sequence BLAST analysis.
Results:
Three prominent substitutions were common to 13 PNSP isolates with minimal inhibitory concentration (MIC) at least 0.1 mg/L. These included the replacement of Thr(445)--> Ala following the conservative motif SSN, Glu(475)-->Gly and Thr(488)-->Ala/Ser. The exchange of Glu(332)-->Gly was identified in 12 PNSP isolates of which the MIC was at least 0. 25 mg/L. Seven penicillin resistant Streptococcus pneumonia (PRSP) isolates (MIC > or = 3 mg/L) shared the amino acid substitution Ala(618)-->Gly adjacent to third conserved (KTG) motif and the PBP2b sequences of seven PRSP isolates were classified within Baek's group II and were very similar to those of the Korean J77 isolate. Novel gene and amino acid sequence variants in isolate 14, 15, 8, 11 and 24 was identified in this study and these gene sequences have been deposited in the GenBank database and assigned accession no. EU035970, EU056919, EU056920, EU056921 and EU106886.
Conclusion:
Analysis of pbp2b genes revealed highly similar patterns of nucleotide and amino acid sequence variation among most resistant isolates, while penicillin intermediate Streptococcus pneumonia might be associated with novel gene sequence variants.
Insights
Penicillin-nonsusceptible Streptococcus pneumoniae (PNSP) showed common gene and amino acid alterations in penicillin-binding protein 2b (PBP2b). Novel variants were linked to intermediate resistance, suggesting PBP2b mutations are key to PNSP antibiotic resistance.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Context:
- Streptococcus pneumoniae is a leading cause of bacterial infections worldwide.
- The emergence of antibiotic resistance in S. pneumoniae poses a significant public health threat.
- Penicillin-binding protein 2b (PBP2b) is a crucial target for penicillin antibiotics.
Purpose:
- To investigate alterations in the gene and amino acid sequences of PBP2b in clinical isolates of penicillin-nonsusceptible S. pneumoniae (PNSP) from a specific region.
- To identify specific mutations associated with varying levels of penicillin resistance.
Summary:
- Twenty-four S. pneumoniae strains were analyzed for antibiotic susceptibility and pbp2b gene sequences.
- Common PBP2b substitutions (Thr445Ala, Glu475Gly, Thr488Ser/Ala) were identified in PNSP isolates with minimal inhibitory concentrations (MICs) ≥0.1 mg/L.
- Specific mutations, including Glu332Gly and Ala618Gly, were associated with higher resistance levels (MICs ≥0.25 mg/L and ≥3 mg/L, respectively).
- Novel sequence variants were found in some resistant isolates, with sequences deposited in GenBank.
Impact:
- Provides insights into the molecular mechanisms of penicillin resistance in S. pneumoniae.
- Highlights the role of PBP2b sequence variations in determining antibiotic susceptibility.
- Contributes to understanding the genetic basis of emerging antibiotic resistance patterns.
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