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Chemical Modification of the Tryptophan Residue in a Recombinant Ca2+-ATPase N-domain for Studying Tryptophan-ANS FRET
Published on: October 9, 2021
Protein aggregation probed by two-photon fluorescence correlation spectroscopy of native tryptophan
Bankanidhi Sahoo1, J Balaji, Suman Nag
1Department of Chemical Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Colaba, Mumbai 400005, India.
The Journal of Chemical Physics
|December 3, 2008
Summary
This study uses intrinsic tryptophan fluorescence and two-photon excitation for fluorescence correlation spectroscopy (FCS) to analyze protein aggregation without labeling. This method effectively probes soluble aggregates in unmodified proteins, offering insights into amyloid toxicity.
Area of Science:
- Biophysics
- Biochemistry
- Spectroscopy
Background:
- Fluorescence correlation spectroscopy (FCS) is valuable for studying protein aggregation.
- A key limitation of FCS is the need for fluorescent labeling of proteins.
- Intrinsic protein fluorescence offers a potential alternative to exogenous labeling.
Purpose of the Study:
- To develop and validate a label-free FCS method using intrinsic tryptophan fluorescence for protein aggregation studies.
- To investigate the aggregation of tryptophan-containing proteins using two-photon excitation.
- To assess the utility of fluorescence lifetime measurements as a complementary parameter in aggregation studies.
Main Methods:
- Utilizing intrinsic tryptophan fluorescence excited by two-photon spectroscopy.
- Applying fluorescence correlation spectroscopy (FCS) to monitor protein dynamics.
- Measuring tryptophan fluorescence lifetime in parallel with FCS.
Main Results:
- Demonstrated effective use of intrinsic tryptophan fluorescence for label-free FCS analysis of protein aggregation.
- Observed clear aggregation signatures in barstar protein at pH 3.5 using two-photon tryptophan FCS.
- Obtained complementary information on the aggregation process through parallel tryptophan fluorescence lifetime analysis.
Conclusions:
- Intrinsic tryptophan fluorescence with two-photon excitation provides a powerful label-free approach for FCS studies of protein aggregation.
- This method is capable of probing soluble aggregates of unmodified proteins.
- The technique offers significant potential for understanding the role of soluble aggregates in diseases like amyloid toxicity.

